Locus 98

Sequence ID 3L_DroMel_CAF1
Location 352,513 – 352,622
Length 109
Max. P 0.731193
window137

overview

Window 7

Location 352,513 – 352,622
Length 109
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 76.90
Mean single sequence MFE -31.54
Consensus MFE -19.69
Energy contribution -19.72
Covariance contribution 0.03
Combinations/Pair 1.29
Mean z-score -1.49
Structure conservation index 0.62
SVM decision value 0.42
SVM RNA-class probability 0.731193
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 352513 109 - 23771897
ACACUUGGCUCCAGACCUGUGCCACUGUCGUCUGCAGCACAAAGAACGCCGAUGAGCAGAACAUCAUCUGCGUGAACUAUGUGAUCAGGUGGG--UUGUAGG-AUAAGC-AAU------
.(((((((((.(((((.............))))).)))(((.((.((((.(((((........))))).))))...)).)))...)))))).(--((((...-....))-)))------ ( -32.12)
>DroVir_CAF1 1700 110 - 1
ACACCUGGCUGCAGACCUGCGCCACGGUCGUCUGCAGCACCAAAAACGCCGACGAGCAGAACAUCAUCUGCGUCAACUAUGUCAUAAGGUGAG--CUUUUGG-AAAGGUUAAU------
..((((.((((((((((((.....)))..))))))))).((((((.((((.....(((((......)))))(.((....)).)....))))..--.))))))-..))))....------ ( -38.20)
>DroWil_CAF1 5411 111 - 1
ACACUUGGCUACAAACCUGCGCCACUGUCGUCUGUAGUACCAAAAAUGCCGAUGAGCAGAACAUAAUAUGCGUCAACUAUGUGAUUAGGUGAGAAUUGCAUUUGCACUA-A-U------
.(((((((.((((....(((((..((((((((.(((..........))).))))).)))..........))).))....)))).))))))).....(((....)))...-.-.------ ( -21.60)
>DroMoj_CAF1 3912 98 - 1
ACACCUGGCUCCAGACCUGCGCCACAGUCGUCUGCAGCACCAAAAAUGCCGACGAGCAGAACAUCAUUUGCGUCAACUACGUUAUAAGGUG---------------GGUGAAU------
.(((((.(((.((((((((.....)))..))))).))).........((((((..(((((......))))))))(((...)))....))))---------------))))...------ ( -26.40)
>DroAna_CAF1 7227 115 - 1
ACACUUGGCUUCAGACCUGCGCUACCGUCGUCUGCAGCACCAAGAAUGCGGACGAGCAGAAUAUCAUCUGCGUUAACUACGUGAUCAGGUAUG--UGGCCUA-AUAAAA-AAUAAAUAA
......((((.((.((((((((.....(((((((((..........)))))))))(((((......))))).........)))..))))).))--.))))..-......-......... ( -37.30)
>DroPer_CAF1 9621 110 - 1
ACACCUGGCUCCAGACAUGCGCCACCGUCGUCUGCAGCACCAAGAACGCCGAUGAGCAGAACAUCAUUUGCGUCAACUAUGUGAUCAGGUAAG--UGGCACAUACAGGA-ACA------
...(((((((.(((((..(((....))).))))).))).....((.(((.(((((........))))).)))))...((((((.(((......--))))))))))))).-...------ ( -33.60)
>consensus
ACACCUGGCUCCAGACCUGCGCCACCGUCGUCUGCAGCACCAAAAACGCCGACGAGCAGAACAUCAUCUGCGUCAACUAUGUGAUCAGGUGAG__UUGCAGA_ACAGGA_AAU______
.(((((((((.(((((..((......)).))))).)))............(((..(((((......))))))))...........))))))............................ (-19.69 = -19.72 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:18 2006