Locus 978

Sequence ID 3L_DroMel_CAF1
Location 2,921,664 – 2,921,758
Length 94
Max. P 0.687524
window1507

overview

Window 7

Location 2,921,664 – 2,921,758
Length 94
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 89.88
Mean single sequence MFE -22.82
Consensus MFE -17.22
Energy contribution -17.70
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.74
Structure conservation index 0.75
SVM decision value 0.32
SVM RNA-class probability 0.687524
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2921664 94 - 23771897
--CUUAUUUCGCUUUCGA-UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---CUUGUGUGCGAAUUAU-CACUUUGGCAUACUGUUGUU
--................-...(((((.((((...(((((.((..((((((.((((.....---.)))).))))))...)-)))))).)))).)))))... ( -23.80)
>DroSec_CAF1 157757 94 - 1
--CUUAUUUCGCUUUCGA-UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUAU-CACUUUGGCAUACUGUAGUU
--................-....((((.((((...(((((.((..((((((.(((((....---))))).))))))...)-)))))).)))).)))).... ( -23.30)
>DroEre_CAF1 165567 94 - 1
--CUUAUUUCGCUUUCGA-UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUAU-CACUUUGGCAUACUGUAGUU
--................-....((((.((((...(((((.((..((((((.(((((....---))))).))))))...)-)))))).)))).)))).... ( -23.30)
>DroYak_CAF1 166651 94 - 1
--AUUAUUUCGCUUUCGA-UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG---UUUGUGUGCGAAUUAU-CACUUUGGUAUACUGUAGUU
--................-....((((.((((...(((((.((..((((((.(((((....---))))).))))))...)-)))))).)))).)))).... ( -21.30)
>DroAna_CAF1 144522 100 - 1
UUUUUUUUUUGCUUUUGUUUUGAACAGAAUGCAUUGGAGGGAUGUUUCGUAAACAAAAAAGGAUUGUGUGUGCGAGUUAUUCACUUUGGCAUACU-UGCUU
.........(((((((((.....)))))).)))..(((((((((.((((((.((((.......))))...)))))).))))).))))((((....-)))). ( -22.40)
>consensus
__CUUAUUUCGCUUUCGA_UUGAACAGAAUGCAUUGGAGUUGAGUUUCGUAAACAAAAAAG___UUUGUGUGCGAAUUAU_CACUUUGGCAUACUGUAGUU
.......................((((.((((...(((((.....((((((.(((((.......))))).))))))......))))).)))).)))).... (-17.22 = -17.70 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:54 2006