Locus 97

Sequence ID 3L_DroMel_CAF1
Location 346,508 – 346,617
Length 109
Max. P 0.600784
window136

overview

Window 6

Location 346,508 – 346,617
Length 109
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 80.67
Mean single sequence MFE -42.88
Consensus MFE -24.24
Energy contribution -24.91
Covariance contribution 0.67
Combinations/Pair 1.33
Mean z-score -1.95
Structure conservation index 0.57
SVM decision value 0.14
SVM RNA-class probability 0.600784
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 346508 109 + 23771897
UUUGCCAUCUGCUCUGCCCGGUCUGGGAUUCAAUAGCACCAUGCCGUCGGCAGCAGAGCCAGGACAAAGUGGCCUGGUU--GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG
.(..((((((((((((((((((.(((............))).))))..)))...(.(((((((.(.....).)))))))--.)....)))))))))))..).......... ( -47.00)
>DroSec_CAF1 553 109 + 1
UUUGCCAUCUGCUCUGCCCGGUUUGGGAUUCAAUAGCAACAUGCCGUCGGCAGCAGAACCCGGAGAAAGUGUACUGGUU--GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG
.(..(((((((((((.(((.....)))........(((((.((((...)))).(((.((.(.......).)).))))))--))....)))))))))))..).......... ( -38.20)
>DroSim_CAF1 1278 109 + 1
UUUGCCAUCUGCUCUGCCCGGAUUGGGAUUCAAUAGCAACAUGCCGUCGGCAGCAGAACCCGGACAAAGUGUACUGGUU--GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG
.(..(((((((((((..((((((....))))....(((((.((((...)))).(((.((.(.......).)).))))))--)).)).)))))))))))..).......... ( -38.90)
>DroEre_CAF1 1877 109 + 1
UCUGCCAUCUGCUCUGCCCGGCCUGGGAUUCAAUAGCAGCAUGCCGUCGGCAGCAGAUCCCGGGCAAAGUGUACUAGCU--GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG
...((((((((((((..((.((((((((((........((.((((...)))))).))))))))))..(((......)))--...)).))))))))))))............ ( -47.70)
>DroYak_CAF1 1848 109 + 1
UCUGCCAUCUGCUCUCCCCGGCCUGGGAUUUAAUAGCAGCAUGCCGUCGGCAACAGACCCCGGACAAAGUGUACUAACU--GUGGGAGGAGCGGAUGGUGAUGUCUUUCAG
...(((((((((((..((((..(((((........((.....)).((((....).))))))))....(((......)))--.))))..)))))))))))............ ( -42.00)
>DroPer_CAF1 2338 106 + 1
GCUGCCCUCCUCCCUGCCCGCCAUGGGCUUCAAUGGAGGCGUGGCCACAACACUAGC-----GAUGCAGAAUAAUGGUGGAGCAGGAGGAGCUGCCAGCGAUGUCUUCCAG
(((((.(((((((.((((((((((..(((((....)))))(((.......)))....-----...........))))))).))))))))))..).))))............ ( -43.50)
>consensus
UCUGCCAUCUGCUCUGCCCGGCCUGGGAUUCAAUAGCAGCAUGCCGUCGGCAGCAGAACCCGGACAAAGUGUACUGGUU__GUAGGAGGAGCAGAUGGUGAUGUCUUCCAG
...(((((((((((((((((((.((..............)).))))..)))......................(((......)))..))))))))))))............ (-24.24 = -24.91 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:17 2006