Locus 968

Sequence ID 3L_DroMel_CAF1
Location 2,882,028 – 2,882,136
Length 108
Max. P 0.567358
window1488

overview

Window 8

Location 2,882,028 – 2,882,136
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 92.04
Mean single sequence MFE -23.34
Consensus MFE -17.82
Energy contribution -18.22
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.76
SVM decision value 0.07
SVM RNA-class probability 0.567358
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2882028 108 - 23771897
CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCAGCUGAGUGGCAGUUCCAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAAUACAAAUAUGCCAAAAC
.((((((((......)))))..((....)).......))).......(((((..........((((((............)))))).............))))).... ( -21.70)
>DroSec_CAF1 126546 108 - 1
CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCUGCUGAGUGGCAGUCACAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAAUACAAAUAUGCGAAAGU
....(((((......)))))..((....))....((((((.((...(((.....))).....((((((............))))))..............)))))))) ( -23.60)
>DroSim_CAF1 117385 108 - 1
CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCUGCUGAGUGGCAGUCACAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAAUACAAAUAUGCGAAAGC
....(((((......)))))..((....)).........(((((....))))).........((((((............))))))..............((....)) ( -23.40)
>DroEre_CAF1 133594 108 - 1
CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCUGCUGACUGGCAGUCACAGAUAUUGCCUGGAUCACAACAAAGCCAAAUUCAUACAACUAUGCGAAAAC
.((((((((......)))))....((((((..(((...((((.((((.....))))))))..)))))))))................))).................. ( -23.60)
>DroYak_CAF1 134300 102 - 1
CGAAGUCCAAAUUUAUGGACAACCUUCAGGAUCAACUUUCUGCUGAGUGGCAGUCAAAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAGUACAAAUGUGC------
.((.(((((......)))))..((....)).))..(((((((((....)))))..))))...((((((............))))))....((((....))))------ ( -24.40)
>consensus
CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCUGCUGAGUGGCAGUCACAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAAUACAAAUAUGCGAAAAC
....(((((......)))))..((....)).........(((((....))))).........((((((............))))))...................... (-17.82 = -18.22 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:36 2006