Locus 955

Sequence ID 3L_DroMel_CAF1
Location 2,852,850 – 2,852,944
Length 94
Max. P 0.891847
window1466

overview

Window 6

Location 2,852,850 – 2,852,944
Length 94
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 77.62
Mean single sequence MFE -27.72
Consensus MFE -16.10
Energy contribution -17.93
Covariance contribution 1.84
Combinations/Pair 1.18
Mean z-score -2.02
Structure conservation index 0.58
SVM decision value 0.97
SVM RNA-class probability 0.891847
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2852850 94 - 23771897
GUCCCACCGAAUCG-------AAGUACGAAAGCGGUGGGGAGUAUCCCACAGAUUCAUUCACGGGCAGCGCAAAAGUUACUCAAUGAAAUUGGCGGGCACA
.((((((((..(((-------.....)))...)))))))).((..((..(((.((((((...(((.(((......))).))))))))).)))..))..)). ( -31.40)
>DroSec_CAF1 97654 94 - 1
GUCCCAUCGAAUCG-------AAGUACGAAGGCGGUGGGGAGUAUCCCACAGAUUCAUUCACGGGCAGCGCAAAAGUUACUCAAUGAAAUUGGCGGACACA
.((((((((..(((-------.....)))...)))))))).((.(((..(((.((((((...(((.(((......))).))))))))).)))..))).)). ( -28.90)
>DroSim_CAF1 88367 94 - 1
GUCCCACCGAAUCG-------AAGUACGAAAGCGGUGGGGAGUAUCCCACAGAUUCAUUCACGGGCAGCGCAAAAGUUACUCAAUGAAAUUGGCGGGUACA
.((((((((..(((-------.....)))...)))))))).((((((..(((.((((((...(((.(((......))).))))))))).)))..)))))). ( -35.00)
>DroEre_CAF1 101091 101 - 1
AUCCCACCGCUUCGCAUGCCCAAGUACGAAAGCGGUGGGGAGUAUCCCACAGAUUCAUUCACGGGCAGCGCAAAAGUUACUCAAUGAAAUCGGCGGGCACA
.(((((((((((((.((......)).)).))))))))))).((..(((.(.((((((((...(((.(((......))).))))))).)))).).))).)). ( -35.30)
>DroWil_CAF1 89222 73 - 1
-UCCAAGCACAUCG--------------CAGGGACUACGACAUAUUCCA---UUUCAUUCA----------AAAAGUUACUCAAUGAAAUUGGCAAGCACC
-(((..((.....)--------------)..)))............(((---(((((((..----------...........))))))).)))........ (  -9.52)
>DroYak_CAF1 102740 82 - 1
AUCCCAUC-------------------GAAAGCGGUGGGGAGUAUCCCACAGAUUCAUUCACGGGCAGCGCCAAAGUUACUCAAUGAAAUUGGCGGGCACA
.(((((((-------------------(....)))))))).((..((..(((.((((((...(((.(((......))).))))))))).)))..))..)). ( -26.20)
>consensus
GUCCCACCGAAUCG_______AAGUACGAAAGCGGUGGGGAGUAUCCCACAGAUUCAUUCACGGGCAGCGCAAAAGUUACUCAAUGAAAUUGGCGGGCACA
.((((((((.......................)))))))).((.(((..(((.((((((...(((.(((......))).))))))))).)))..))).)). (-16.10 = -17.93 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:15 2006