Locus 948

Sequence ID 3L_DroMel_CAF1
Location 2,839,969 – 2,840,059
Length 90
Max. P 0.824872
window1458

overview

Window 8

Location 2,839,969 – 2,840,059
Length 90
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 86.59
Mean single sequence MFE -26.70
Consensus MFE -18.24
Energy contribution -19.24
Covariance contribution 1.00
Combinations/Pair 1.09
Mean z-score -2.38
Structure conservation index 0.68
SVM decision value 0.69
SVM RNA-class probability 0.824872
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2839969 90 - 23771897
UUUUCG--------GCCAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAUCGAGAGGUGCUCAGCUUAAUUGAGAAAGUUUUUAAUUUUAAUAAUAAGC--
......--------(((....)))..((((...((..(((((((((((((....)))))))))..))))..))..))))...................-- ( -25.60)
>DroSec_CAF1 84905 90 - 1
UUUUCG--------GCCAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAUCGAGAGGUGCUCAGCUUAAUUGAGAAAGUUUUUAAUUUUAAUAACAAGC--
......--------(((....)))...(((...((..(((((((((((((....)))))))))..))))..))...(((.(((....))).))).)))-- ( -25.80)
>DroSim_CAF1 75594 90 - 1
UUUUCG--------GCCAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAUCGAGAGGUGCUCAGCUUAAUUGAGAAAGUUUUUAAUUUUAAUAACAAGC--
......--------(((....)))...(((...((..(((((((((((((....)))))))))..))))..))...(((.(((....))).))).)))-- ( -25.80)
>DroEre_CAF1 88088 89 - 1
UAUUCGC---------CAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAGCG--AGGUGGUCCGCUUGAUUGGGAAAGUUUUCAAUUUUAAUAACAAGCGC
..(((((---------(....)))...(((((((.........))))))))--))......((((((.(((..(((((.....)))))..))))))))). ( -28.20)
>DroYak_CAF1 89098 98 - 1
UAUUCGCCCAAAUGGCCAAAUGGCACAGCUGUCCUUGAUUAUUGGCCAUCG--AGGUGCUCAGCUAAAUUGGGAUAGUUUUUAAUUUUAAUAGCACGGAC
..(((((((((...(((....)))..(((((.(((((((........))))--)))....)))))...)))))...(((.(((....))).))).)))). ( -28.10)
>consensus
UUUUCG________GCCAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAUCGAGAGGUGCUCAGCUUAAUUGAGAAAGUUUUUAAUUUUAAUAACAAGC__
..............(((....)))..((((...((..(((((((((((((....)))))))))..))))..))..))))..................... (-18.24 = -19.24 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:08 2006