| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,833,020 – 2,833,113 |
| Length | 93 |
| Max. P | 0.803867 |
| Location | 2,833,020 – 2,833,113 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 91.80 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -14.81 |
| Energy contribution | -14.88 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.803867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2833020 93 - 23771897 CUUCAUUUUUCCCUUGCUCUUGCUGUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAUGAAAUCCUCCUGCCACGUCC-ACCUUUAUUUCCA .......((((....((...(((...(((.(((.......))).)))..)))...))...))))................-............. ( -13.30) >DroSec_CAF1 78060 92 - 1 CUUCAUU-UUCCCUUGCUGUUGCUGUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAGGAAAUCCUCCUGGCACGCCC-ACCUUUAUUUCCA .......-.......((...(((...(((.(((.......))).)))..)))..((((((((.....)))))))).))..-............. ( -24.60) >DroSim_CAF1 68643 93 - 1 CUUCAUUUUUCCCUUGCUGUUGCUGUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAGGAAAUCCUCCUGCCACGCCC-ACCUUUAUUUCCA ...............((...(((...(((.(((.......))).)))..)))...))(((((.....)))))........-............. ( -17.80) >DroYak_CAF1 81213 89 - 1 CUUCAUUUUUCUCU-----UUGCUAUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAGGAAAUCCUCCUGUCGCUCCCAACCUUUAUUUCCA ..............-----.(((...(((.(((.......))).)))..)))...(((((((.....)))))..)).................. ( -16.30) >consensus CUUCAUUUUUCCCUUGCUGUUGCUGUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAGGAAAUCCUCCUGCCACGCCC_ACCUUUAUUUCCA ....................(((...(((.(((.......))).)))..)))..((.(((((.....))))).))................... (-14.81 = -14.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:03 2006