| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,817,565 – 2,817,672 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 2,817,565 – 2,817,672 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 67.25 |
| Mean single sequence MFE | -26.52 |
| Consensus MFE | -10.47 |
| Energy contribution | -10.92 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.39 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2817565 107 + 23771897 UGG---AGUGUGGUAACUACGGCCAGACAGUU-GGCCAGAAAAAAAAAAGGCGAGCUGGGAAAAUAA-CGAAAUUGGUAACGAAAUCCGCACGUGGCCAACAGGCGGUUAUA ...---.((((((........(((((.(((((-.(((............))).)))))(........-)....)))))........))))))((((((.......)))))). ( -30.89) >DroGri_CAF1 65159 89 + 1 ---CGCCAUGUGCCAAAUAUGGCCAGACAGUUUGGCCAAGAGC--------GCCAUUGGU--GUGCG-CGAAAUUGCUAACUGAAUUUGCAUGUGACGU-----CGCU---- ---((.(((((((.((((.((((((((...))))))))...((--------((((....)--).)))-)...............))))))))))).)).-----....---- ( -28.00) >DroSim_CAF1 53907 106 + 1 UGG---AGUGUGGUAACUACGGCCAGACAGUU-GGCCAAAAAAAA-AAAGGCGAGCUGGGAAAAUAA-CGAAAUUGGUAACGCAAUCCGCACGUGGCCAACAGGCGGUUAUA ...---.((((((........(((((.(((((-.(((........-...))).)))))(........-)....)))))........))))))((((((.......)))))). ( -30.99) >DroEre_CAF1 65228 104 + 1 UGG---AGUGUGGUAACUACGGCCAGACAGUU-GGCCAAAAAAAAAAAAAACGCAUUGGAAAAAUACUCUAAAUUGGUAACGAAAUUCGCACGUGGCCAACAGGCGGU---- ...---.((.((((.......)))).)).(((-(((((.................(((((.......))))).(((....)))..........)))))))).......---- ( -23.90) >DroYak_CAF1 64688 85 + 1 UGG---AGUGUGGUAACAACGGGCAGACAGUU-GGCCAAAAAA---AAAAACGCAUUGGGAAA--------------------AAUCCGCACGUGGCCAACACGCGGUUAAA ..(---(.((((((........)).....(((-(((((.....---..........(((((..--------------------..))).))..)))))))).)))).))... ( -18.83) >consensus UGG___AGUGUGGUAACUACGGCCAGACAGUU_GGCCAAAAAAAA_AAAAACGCAUUGGGAAAAUAA_CGAAAUUGGUAACGAAAUCCGCACGUGGCCAACAGGCGGUUA_A (((....((((((.......((((.........))))......................................(....).....))))))....)))............. (-10.47 = -10.92 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:55 2006