Locus 94

Sequence ID	3L_DroMel_CAF1
Location	344,050 – 344,170
Length	120
Max. P	0.966139

overview

Window 2

Location	344,050 – 344,170
Length	120
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	98.89
Mean single sequence MFE	-54.30
Consensus MFE	-54.52
Energy contribution	-54.30
Covariance contribution	-0.22
Combinations/Pair	1.03
Mean z-score	-2.35
Structure conservation index	1.00
SVM decision value	1.59
SVM RNA-class probability	0.966139
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 344050 120 + 23771897
UUGGCCAAGCGGGCGCGUGCCUCGGACAGCAUUUCCAGCUCGUCCUCGUCCAUGUCCUUGGGAUCGGGCCGCGCCGGCUUGGUCUCUGGAUUGGGGUCAAUCUCUCCGGGCUUCAACUUG
..((((((((.((((((.((((.(((((((.......))).))))...((((......))))...)))))))))).))))))))((((((..((((....)))))))))).......... ( -56.10)
>DroSec_CAF1 16632 120 + 1
UUGGCCAAGCGGGCGCGUGCCUCGGACAGCAUUUCCAGCUCGUCCUCGUCCAUGUCCUUGGGAUCGGGUCGCGCCGGCUUGGUCUCUGGAUUGGGGUCAAUCUCUCCGGGCUUUAACUUG
..((((((((.((((((.((((.(((((((.......))).))))...((((......))))...)))))))))).))))))))((((((..((((....)))))))))).......... ( -53.40)
>DroSim_CAF1 16209 120 + 1
UUGGCCAAGCGGGCGCGUGCCUCGGACAGCAUUUCCAGCUCGUCCUCGUCCAUGUCCUUGGGAUCGGGUCGCGCCGGCUUGGUCUCUGGAUUGGGGUCAAUCUCUCCGGGCUUUAACUUG
..((((((((.((((((.((((.(((((((.......))).))))...((((......))))...)))))))))).))))))))((((((..((((....)))))))))).......... ( -53.40)
>consensus
UUGGCCAAGCGGGCGCGUGCCUCGGACAGCAUUUCCAGCUCGUCCUCGUCCAUGUCCUUGGGAUCGGGUCGCGCCGGCUUGGUCUCUGGAUUGGGGUCAAUCUCUCCGGGCUUUAACUUG
..((((((((.((((((.((((.(((((((.......))).))))...((((......))))...)))))))))).))))))))((((((..((((....)))))))))).......... (-54.52 = -54.30 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:11 2006