Locus 937

Sequence ID 3L_DroMel_CAF1
Location 2,811,185 – 2,811,279
Length 94
Max. P 0.790963
window1440

overview

Window 0

Location 2,811,185 – 2,811,279
Length 94
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 89.41
Mean single sequence MFE -20.88
Consensus MFE -15.76
Energy contribution -15.68
Covariance contribution -0.08
Combinations/Pair 1.11
Mean z-score -1.91
Structure conservation index 0.75
SVM decision value 0.59
SVM RNA-class probability 0.790963
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2811185 94 - 23771897
-AACUGGAGAAAUUCAGGCCAGAACCAGAGGCAGAGGCAG--AGCAAUUGUUGCAAUAGCAAGAUGAAAAAAAGGGUGGCA--AAA--AAAUUGCUCAUCA
-..(((((....)))))(((....((...))....))).(--(((((((.((((....((....(....).....)).)))--)..--.)))))))).... ( -24.80)
>DroSec_CAF1 56276 90 - 1
-AACUGGGGAAAUUCAGGCCAGAACCAGAG------GCAG--AGCAAUUGUUGCAAUGGCAAGAUGAAAAAAGGGGUGGCA--AAAAAAAAUUGCUCAUCA
-..(((((....)))))(((.........)------)).(--(((((((.((((....((....(......)...)).)))--).....)))))))).... ( -19.20)
>DroSim_CAF1 47568 89 - 1
-AACUGGGGAAAUUCAGGUCAGAACCAGAG------GCAG--AGCAAUUGUUGCAAUGGCAAGAUGAAAAAAGGGGUGGCA--AAAA-AAACUGCUCAUCA
-..(((((....))))).(((...(((...------((((--........))))..))).....))).......(((((((--....-....))).)))). ( -17.40)
>DroEre_CAF1 58765 97 - 1
AAACUGGGGAAAUUCAGGCCAGAACCAGAGGCAGAGGCAG--AGCAAUUGUUGCAAUGGCAAGAUGGAAAAAGGGGUGGCA--AAAAAAAAUUGCUCAUCA
...((((.(.....)...))))..(((...((....((((--........))))....))....))).......(((((((--(.......)))).)))). ( -20.90)
>DroYak_CAF1 58105 100 - 1
-AACUGGUGAAAUUCAGGCCAGUACCAGAGGCAGAAGCAGCUAGCAAUUGUUGCAACGGCAAGAUGAAAAAAGGGGUGGCAGAAAAAAAAAUUGCUCAUCA
-.((((((.........))))))..((...((.(..(((((........)))))..).))....))........((((((((.........)))).)))). ( -22.10)
>consensus
_AACUGGGGAAAUUCAGGCCAGAACCAGAGGCAGA_GCAG__AGCAAUUGUUGCAAUGGCAAGAUGAAAAAAGGGGUGGCA__AAAAAAAAUUGCUCAUCA
...(((((....)))))((((...((..........((.....))...(.((((....)))).).........)).))))..................... (-15.76 = -15.68 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:50 2006