Locus 914

Sequence ID 3L_DroMel_CAF1
Location 2,774,069 – 2,774,174
Length 105
Max. P 0.541234
window1407

overview

Window 7

Location 2,774,069 – 2,774,174
Length 105
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 77.10
Mean single sequence MFE -46.02
Consensus MFE -25.45
Energy contribution -24.76
Covariance contribution -0.69
Combinations/Pair 1.38
Mean z-score -1.60
Structure conservation index 0.55
SVM decision value 0.02
SVM RNA-class probability 0.541234
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2774069 105 + 23771897
UCAGAGGUGGCACGCCUGCCACCGUUCCUCCUGGACCUCCUCCUCCUAGUCCA------CCCACCUGCGCCUGCAUGCCCAUCGGAGCAUGGGGCGUUGGCCACUGGCCGU
.(((.(((((((....)))))))........(((((............)))))------.....)))(((((.(((((((...)).))))))))))..((((...)))).. ( -40.30)
>DroPse_CAF1 22442 102 + 1
UGAGGGGCGGAACACCGGCUAC------UCCGGGGGGUCCUCCUCCCAAUCCCGGAGGUCCGGCCUGGGCGCCCAUGCCCAUG---GCGUGCGGCGCCGGCCAGUUGCCGU
......(((((((...((...(------(((((((((.......)))...)))))))..))((((..((((((((((((...)---))))).)))))))))).))).)))) ( -57.40)
>DroSec_CAF1 19228 105 + 1
UCAGAGGUGGCACGCCUGCCACCGUUCCUCCUGGACCUCCUCCUCCUAAUCCA------CCCACCUGCGCCUGCAUGCCCAUUGGAGCAUGGGGCGUUGGCCACUGCCCGU
.(((.(((((((....)))))))(.(((....))).)................------....((.((((((.(((((((...)).))))))))))).))...)))..... ( -37.00)
>DroEre_CAF1 21013 105 + 1
UCAGAGGUGGCACUCCUGCCACCGCGCCUCCUGGUCCUCCUCCUCCCAGUCCG------CCCACCUGCGCCUGCAUGCCCAUCGGAGCAUGGGGCGUUGGCCACUGGCCGU
.....(((((((....)))))))(.(((....))).)........(((((..(------((.....((((((.(((((((...)).))))))))))).))).))))).... ( -42.50)
>DroYak_CAF1 18641 105 + 1
UCAGAGGUGGCACACCUGCCACCGCGCCUCCUGGAACACCUCCUCCCAGUCCG------CCCACCUGCGCCUGCAUGCCCAUCGGAGCAUGAGGCGUUGGCCACUGGCCGU
.....(((((((....)))))))(((......(((.....)))..(((((..(------((.....((((((.(((((((...)).))))))))))).))).))))).))) ( -43.40)
>DroPer_CAF1 22236 102 + 1
UGAGGGGCGGAACACCUGCUAC------UCCGGGGGGUCCUCCUCCCAAUCCCGGAGGUCCGGCCUGGGCGCCCAUGCCCAUG---GCGUGCGGCGCCGGCCAGUUGCCGU
...(((((((.....))))).(------(((((((((.......)))...)))))))..))((((..((((((((((((...)---))))).))))))))))......... ( -55.50)
>consensus
UCAGAGGUGGCACACCUGCCACCG__CCUCCUGGACCUCCUCCUCCCAAUCCA______CCCACCUGCGCCUGCAUGCCCAUCGGAGCAUGGGGCGUUGGCCACUGGCCGU
....(((((((......)))...........((((..............)))).........))))((((((.(((((........)))))))))))((((.....)))). (-25.45 = -24.76 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:18 2006