Locus 913

Sequence ID 3L_DroMel_CAF1
Location 2,772,230 – 2,772,378
Length 148
Max. P 0.999469
window1405 window1406

overview

Window 5

Location 2,772,230 – 2,772,338
Length 108
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.72
Mean single sequence MFE -45.88
Consensus MFE -42.15
Energy contribution -41.43
Covariance contribution -0.72
Combinations/Pair 1.18
Mean z-score -3.34
Structure conservation index 0.92
SVM decision value 1.91
SVM RNA-class probability 0.982096
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2772230 108 - 23771897
CCACGUCGUGGACGACCCUGUUCCCCACGCAUCCGUGCGUGGUUUCGGGGAAAUACCCGGAGGGCAAUAGCAGUCCGACCUCGUCCACGAACAACGCGCCC------A---ACGGUG
.....(((((((((((((((....(((((((....)))))))...))))).......((((..((....))..))))...))))))))))......((((.------.---..)))) ( -49.20)
>DroVir_CAF1 7671 108 - 1
CAACGUCGUGGACGACCCUGUUUCCUAUGCACCCAUGUGUGGUUACGGGGCCCUAUCAGGAGGGCAAUAGCAGUCCAACCUCGUCCACGAAUGGCAGCGCC------A---ACGCCA
.....((((((((((((((((..((.(((((....)))))))..))))))........(((..((....))..)))....)))))))))).((((...)))------)---...... ( -42.80)
>DroWil_CAF1 7253 98 - 1
CCACGUCGUGGACGACCCUGUUUCCUAUGCACCCUUGUGUGGUUACAGGGCCCUACCAGGAGGGCAAUAGCAGUCCAACUUCGUCCACGAAUGGCCA-------------------G
(((..((((((((((((((((..((.(((((....)))))))..))))))........(((..((....))..)))....)))))))))).)))...-------------------. ( -42.20)
>DroMoj_CAF1 7767 111 - 1
CAACGUCGUGGACGACCCUGUUCCCUAUGCACCCAUGCGUAGUUACGGGGCCCUACCAGGAGGGCAAUAGCAGUCCAACAUCGUCCACGAAUGGCAGCGCC------ACCAAUGGCA
...((((((((((((((((((...(((((((....)))))))..))))))........(((..((....))..)))....))))))))).))).....(((------(....)))). ( -47.30)
>DroAna_CAF1 8202 114 - 1
CCACGUCGUGGACGACCCUGUUCCCCAUGCAUCCGUGCGUGGUUACGGGGACCUAUCCGGAGGGCAAUAGCAGUCCGACCUCGUCCACGAACAACAACAGCAACAGCA---ACGCUG
.....((((((((((((((((...(((((((....)))))))..)))))).......((((..((....))..))))...)))))))))).......((((.......---..)))) ( -49.80)
>DroPer_CAF1 20175 108 - 1
CAACAUCGUGGACGACCCUGUUUCCUAUGCAUCCUUGUGUGGUUACGGGGCCCUAUCAGGAGGGCAAUAGCAGUCCGACUUCGUCCACGAAUGGCAGCGCC------A---ACAACA
.....((((((((((((((((..((.(((((....)))))))..))))))........(((..((....))..)))....)))))))))).((((...)))------)---...... ( -44.00)
>consensus
CAACGUCGUGGACGACCCUGUUCCCUAUGCACCCAUGCGUGGUUACGGGGCCCUACCAGGAGGGCAAUAGCAGUCCAACCUCGUCCACGAAUGGCAGCGCC______A___ACGCCA
.....((((((((((((((((...(((((((....)))))))..))))))........(((..((....))..)))....))))))))))........................... (-42.15 = -41.43 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 2,772,258 – 2,772,378
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.94
Mean single sequence MFE -40.62
Consensus MFE -37.43
Energy contribution -36.82
Covariance contribution -0.61
Combinations/Pair 1.19
Mean z-score -2.82
Structure conservation index 0.92
SVM decision value 3.63
SVM RNA-class probability 0.999469
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2772258 120 - 23771897
AAAAACGAGAAGGUUGCCCUCCACGCACCAACACUGACGACCACGUCGUGGACGACCCUGUUCCCCACGCAUCCGUGCGUGGUUUCGGGGAAAUACCCGGAGGGCAAUAGCAGUCCGACC
.....((.((..((((((((((.........(((.((((....))))))).....(((((....(((((((....)))))))...)))))........)))))))))).....))))... ( -50.00)
>DroPse_CAF1 20496 120 - 1
AAAAACGAGAAAGUUGCCCUCCACGCACCAACACUAACAACAACAUCGUGGACGACCCUGUUUCCUAUGCAUCCUUGUGUGGUUACGGGGCCCUAUCAGGAGGGCAAUAGCAGUCCGACU
.....((.((..((((((((((.......................(((....)))((((((..((.(((((....)))))))..))))))........)))))))))).....))))... ( -38.50)
>DroGri_CAF1 7520 120 - 1
AAAAACGAGAAAGUUGCCCUCCACGCACCAACACUAACAACAACGUCGUGGACAACCCUGUUUCCUAUGCACCCAUGUGUGGUUACGGGGCCCUAUCAGGAGGGCAAUAGCAGUCCGACA
.....((.((..((((((((((.....(((..((..........))..)))....((((((..((.(((((....)))))))..))))))........)))))))))).....))))... ( -37.70)
>DroWil_CAF1 7271 120 - 1
AAAAACGAGAAAGUUGCCCUCCACGCACCAACACUAACAACCACGUCGUGGACGACCCUGUUUCCUAUGCACCCUUGUGUGGUUACAGGGCCCUACCAGGAGGGCAAUAGCAGUCCAACU
............((((((((((..................((((...))))....((((((..((.(((((....)))))))..))))))........))))))))))............ ( -39.00)
>DroMoj_CAF1 7798 120 - 1
AAAAACGAGAAAGUUGCCCUCCACGCACCAACACUAACAACAACGUCGUGGACGACCCUGUUCCCUAUGCACCCAUGCGUAGUUACGGGGCCCUACCAGGAGGGCAAUAGCAGUCCAACA
............((((((((((.....................((((...)))).((((((...(((((((....)))))))..))))))........))))))))))............ ( -40.00)
>DroPer_CAF1 20203 120 - 1
AAAAACGAGAAAGUUGCCCUCCACGCACCAACACUAACAACAACAUCGUGGACGACCCUGUUUCCUAUGCAUCCUUGUGUGGUUACGGGGCCCUAUCAGGAGGGCAAUAGCAGUCCGACU
.....((.((..((((((((((.......................(((....)))((((((..((.(((((....)))))))..))))))........)))))))))).....))))... ( -38.50)
>consensus
AAAAACGAGAAAGUUGCCCUCCACGCACCAACACUAACAACAACGUCGUGGACGACCCUGUUUCCUAUGCACCCUUGUGUGGUUACGGGGCCCUACCAGGAGGGCAAUAGCAGUCCGACU
............((((((((((.........(((.............))).....((((((...(((((((....)))))))..))))))........))))))))))............ (-37.43 = -36.82 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:17 2006