Locus 910

Sequence ID 3L_DroMel_CAF1
Location 2,768,061 – 2,768,165
Length 104
Max. P 0.912344
window1401

overview

Window 1

Location 2,768,061 – 2,768,165
Length 104
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 68.95
Mean single sequence MFE -22.56
Consensus MFE -8.62
Energy contribution -9.66
Covariance contribution 1.04
Combinations/Pair 1.32
Mean z-score -2.03
Structure conservation index 0.38
SVM decision value 1.08
SVM RNA-class probability 0.912344
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2768061 104 + 23771897
--------AAUCUAAAUGGCGAAUGGGAAAUUGAGCCAUAAACGGGUUUCAUC-CAACAUUAACAGACACUCCCAUUUAGUUUCUUAAUUUU------UUUAAGACCUCAUAAA-AUUCU
--------...((((((((.((.(((((....(((((.......)))))..))-)..(.......).)).))))))))))..((((((....------.)))))).........-..... ( -18.60)
>DroSec_CAF1 13266 95 + 1
AUAUGGGUAAUCUAAAUGGGGAA-------UGGAGCCAUAAACGGGUUUCAUU-CAACCUCAAC-GACACUCCCAUUU----------UUUU------UUUAAGACCCCAUAAAAGUUCU
.((((((...(((((((((((((-------(((((((.......)))))))))-)...(.....-).....)))))))----------....------....))).))))))........ ( -25.60)
>DroSim_CAF1 3468 113 + 1
CUAUGGGUAAUCUAAAUGGGGAAUGGGAAAUGGAGCCAUAAACGGGUUUCAUC-CAACAUCAACAGACAAUCCCAUUUAGUUUCUUCAUUUU------UUUAAGACCCCAUAAAAAUUCU
.((((((....((((((((((....(((..(((((((.......)))))))))-)....((....))...))))))))))..((((.(....------.).)))).))))))........ ( -29.40)
>DroEre_CAF1 15033 117 + 1
CUGUGGCAAGUCGAAAUGGGAAAUUUUAAAUGGAUUUUUAAACAGGUUUUACCUCGAAGUCAAC--ACACUCCCAAUUAGUUUAUAACUUUUAGGGUCUCUAA-ACCCAUUUAAAGUUCU
.((((.....((((....((((((((.....)))))))).....((.....))))))......)--)))................((((((..((((......-))))....)))))).. ( -18.60)
>DroYak_CAF1 12600 109 + 1
----------UCUAAAUGAAGAAUGGACAAUAGAGCUCUAAACAGGUUUUACCUGAACAUCAAUAGACACUCCCAUUUAGUUUCUUAAUUUUAGGGCCUCUAA-ACCCACUUAAAAUUCU
----------.............(((....((((((((((((((((.....)))).........(((.(((.......))).)))....))))))).))))).-..)))........... ( -20.60)
>consensus
_U_UGG__AAUCUAAAUGGGGAAUGGGAAAUGGAGCCAUAAACGGGUUUCAUC_CAACAUCAACAGACACUCCCAUUUAGUUUCUUAAUUUU______UUUAAGACCCCAUAAAAAUUCU
...........((((((((((.........(((((((.......)))))))........((....))...))))))))))........................................ ( -8.62 =  -9.66 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:12 2006