Locus 907

Sequence ID 3L_DroMel_CAF1
Location 2,740,093 – 2,740,186
Length 93
Max. P 0.997532
window1395

overview

Window 5

Location 2,740,093 – 2,740,186
Length 93
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 76.82
Mean single sequence MFE -28.92
Consensus MFE -17.44
Energy contribution -18.12
Covariance contribution 0.68
Combinations/Pair 1.12
Mean z-score -2.75
Structure conservation index 0.60
SVM decision value 2.88
SVM RNA-class probability 0.997532
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2740093 93 + 23771897
UUCUCUAAAUAGUUUUGCGUGCGACGCAGCAGAAUCGG--CGACCAGGG--AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCACGG
.................(((((..((((((.......)--)..((.((.--....))........((((((....))))))))....))))))))). ( -30.70)
>DroSec_CAF1 95664 80 + 1
UUCUCUAAAUAGUUUUGCGUGCGACGCAGCA---------------GGG--AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCACGG
.................(((((..((((...---------------((.--....))........((((((....))))))......))))))))). ( -27.50)
>DroSim_CAF1 94470 80 + 1
UUCUCUAAAUAGUUUUGCGUGCUACGCAGCA---------------GGG--AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCACGG
.................(((((..((((...---------------((.--....))........((((((....))))))......))))))))). ( -27.50)
>DroYak_CAF1 97754 87 + 1
UUCUCUAAAUAGUUUUGCGUGCGACGCAGCAG--------CAGCCAGGG--AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCGUGG
...............((((.....))))((.(--------((.((.((.--....))........((((((....)))))).))...))).)).... ( -29.10)
>DroMoj_CAF1 106216 84 + 1
UUCUCUAAAUAGUUUUGCGUGCGACGCAAUGCG-AGAGCA------UGGCAAGAGCCAAGGG--GCGAGAGGCAAGAGGCAGGAGACUGUGCC----
.((((.......((((((((((..(((...)))-...)))------).))))))(((....)--))))))(((.....((((....)))))))---- ( -29.80)
>consensus
UUCUCUAAAUAGUUUUGCGUGCGACGCAGCA_______________GGG__AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCACGG
((((((........(((((.....))))).....................................(((((....)))))))))))........... (-17.44 = -18.12 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:07 2006