Locus 898

Sequence ID 3L_DroMel_CAF1
Location 2,718,882 – 2,718,984
Length 102
Max. P 0.510849
window1380

overview

Window 0

Location 2,718,882 – 2,718,984
Length 102
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 71.25
Mean single sequence MFE -18.30
Consensus MFE -7.77
Energy contribution -9.80
Covariance contribution 2.03
Combinations/Pair 1.06
Mean z-score -1.70
Structure conservation index 0.42
SVM decision value -0.04
SVM RNA-class probability 0.510849
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2718882 102 + 23771897
GGUUCAGUGCUACCUGAACCAAACAAUUGCUCGACAGCAAAAGUCAAUUGGGCG---ACACACGCAACAUCACACACACACAC---UCA-GCACAGCACAGCACACCAC
(((...(((((..((((.((((((..(((((....)))))..))...))))(((---.....)))..................---)))-)...))))).....))).. ( -22.50)
>DroVir_CAF1 93693 86 + 1
CCUUUUGUGCUACCUGA-CCAAACAAUUGCACCACAACAAAAGUCAAUUGGACGGACACACACACAAAUUCGAACACACG-----------CAUAG-----------GC
...((((((.....((.-((...((((((.((..........))))))))...)).))....))))))............-----------.....-----------.. ( -11.00)
>DroSec_CAF1 79250 95 + 1
GGUUCAGUGCUACCUGAACCAAACAAUUGCUCGACAGCAAAAGUCAAUUGGGCG---ACACACGCAACAGCACACACGCU-----------CACAGCGCAGCAAGCCAC
(((((((......)))))))......(((((((((.......)))...((((((---......((....)).....))))-----------))....).)))))..... ( -25.50)
>DroSim_CAF1 78195 93 + 1
GGUUCAGUGCUACCUGAACCAAACAAUUGCUCGACAGCAAAAGUCAAUUGGGCG---ACACACGCAACAGCACACACA-------------CACAGCGCAGCAAGCCAC
(((((((......)))))))...((((((((..........)).))))))(((.---.....(((.............-------------....)))......))).. ( -21.63)
>DroEre_CAF1 86598 88 + 1
GGUUCACUGCCACCUGAACCAAACAAUUGCUCGACAGCAAAAGUCAAUUGGGCG---ACACACGCAACAUCACACACACACCCCAAACACC------------------
((((((........))))))......((((((((..((....))...)))))))---).................................------------------ ( -14.60)
>DroAna_CAF1 79220 84 + 1
-AUUCUCGACUACCUGAACCAAACAAUUGCUCGACACCAAAAGUCAAUUGGGCAGGCAUACACGCA-CAGCACAGGC--CC----------CACAGAG-----------
-...(((.....((((..........(((((((((.......)))....))))))((......)).-.....)))).--..----------....)))----------- ( -14.60)
>consensus
GGUUCAGUGCUACCUGAACCAAACAAUUGCUCGACAGCAAAAGUCAAUUGGGCG___ACACACGCAACAGCACACACACA___________CACAGCG_________AC
(((((((......)))))))...((((((((..........)).)))))).(((........)))............................................ ( -7.77 =  -9.80 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:53 2006