Locus 895

Sequence ID 3L_DroMel_CAF1
Location 2,709,744 – 2,709,836
Length 92
Max. P 0.740751
window1375

overview

Window 5

Location 2,709,744 – 2,709,836
Length 92
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 86.63
Mean single sequence MFE -22.20
Consensus MFE -16.97
Energy contribution -17.09
Covariance contribution 0.13
Combinations/Pair 1.05
Mean z-score -1.73
Structure conservation index 0.76
SVM decision value 0.45
SVM RNA-class probability 0.740751
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2709744 92 - 23771897
---CUUAAAUUGCACACUGAAUGCACACCAACCGCAGAAGUCGAAAGUGCAGGAUACCGAAAGAGAACUAUGCACUACUGUGCACUGUGAAAAAU
---.(((...((((((((...(((.........)))..)))....((((((.....((....).).....))))))...)))))...)))..... ( -20.00)
>DroSec_CAF1 70512 92 - 1
---CUUAGAUUGCACACUUAAUGCACACCAACCGCAGAAGUCGAGAGUGCAGAAUGCCAAAAGAGAACUAUGCACUUCUGUGCACUGUUGAAAAU
---......((((((.(((..(((.........)))......))).)))))).............(((..(((((....)))))..)))...... ( -19.00)
>DroEre_CAF1 77594 91 - 1
---CAUAGAUUGCACACUGAAUGCGCACCAACCGCAGAAGUCGAAAGUGCAGAAUGCCAA-GGAAAACUAUGCACUUACGUGCACUGUGAAAAAU
---(((((..((((((((...((((.......))))..))).(.(((((((.....(...-.).......))))))).)))))))))))...... ( -25.80)
>DroYak_CAF1 71190 95 - 1
GUACUUAGAUUGCACACUGAAUGCACAGCAACCGCAGAAGUCGAAAGUGCAGAAUGCCAACAGAGAGGUAUGCACUUACGUGCACUGUAAACAAU
....(((.(.((((((((...(((.........)))..))).(.(((((((...((((........))))))))))).)))))).).)))..... ( -24.00)
>consensus
___CUUAGAUUGCACACUGAAUGCACACCAACCGCAGAAGUCGAAAGUGCAGAAUGCCAAAAGAGAACUAUGCACUUACGUGCACUGUGAAAAAU
..........((((((((...(((.........)))..)))...(((((((......(....).......)))))))..)))))........... (-16.97 = -17.09 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:48 2006