Locus 887

Sequence ID 3L_DroMel_CAF1
Location 2,688,002 – 2,688,097
Length 95
Max. P 0.518235
window1363

overview

Window 3

Location 2,688,002 – 2,688,097
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 94.53
Mean single sequence MFE -19.30
Consensus MFE -16.44
Energy contribution -17.00
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.25
Structure conservation index 0.85
SVM decision value -0.03
SVM RNA-class probability 0.518235
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2688002 95 - 23771897
AUUGUUCCAUUCAAGAAAGCUAUCCCCGAUUUUAAGUUAGUCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACAUCCGCAGAUAGCGAAAAAC
..................((((((..((((..(((((((((..(((..(.....)..)))..))).))))))...)).))..))))))....... ( -18.50)
>DroSec_CAF1 49057 95 - 1
AUUUCUCCAUUCAAGAAAGCUAUCCACGAUUUUAAGUCAGUCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC
.(((((.......)))))((((((...(((.....)))........(((....(((((((((....))))).))))...)))))))))....... ( -19.90)
>DroSim_CAF1 47878 95 - 1
AUUGUUCCAUUCAAGAAAGCUAUCCACGAUUUUAAGUCAGUCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC
..................((((((...(((.....)))........(((....(((((((((....))))).))))...)))))))))....... ( -18.70)
>DroEre_CAF1 53893 95 - 1
AUUGCUCCAUUCAAGAACGCUAUCCCCAAAUUGAAGUUAGCCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC
.................(((((((.......((((((((((..(((..(.....)..)))..))).))))).))........)))))))...... ( -19.76)
>DroYak_CAF1 49591 95 - 1
AUUGCUCCAUCCAAGAAAGCUAUCCCCGAUUUUAAGUUAGCCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC
.(((((..(((((((((.((((...............)))).))))))...(((((((((((....))))).))))...)).))))))))..... ( -19.66)
>consensus
AUUGCUCCAUUCAAGAAAGCUAUCCCCGAUUUUAAGUUAGUCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC
..................((((((..((....(((((((((..(((..(.....)..)))..))).))))))......))..))))))....... (-16.44 = -17.00 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:36 2006