Locus 8763

Sequence ID 3L_DroMel_CAF1
Location 22,967,530 – 22,967,627
Length 97
Max. P 0.879093
window14339

overview

Window 9

Location 22,967,530 – 22,967,627
Length 97
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 78.88
Mean single sequence MFE -20.27
Consensus MFE -15.32
Energy contribution -15.66
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.76
SVM decision value 0.91
SVM RNA-class probability 0.879093
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22967530 97 + 23771897
CAUUUAAAACUUACAAUUAUGGCUCCAAAUCUAACUCGAGUGCUCCACAAACAGCAGCGCCA------GAGCAUUCGAAAGUCAAGAACGCCACAAAAAUCUG
...................((((............((((((((((.................------))))))))))..((.....)))))).......... ( -18.23)
>DroSim_CAF1 2240 97 + 1
CAUUCAAAGCUUACAAUUCUGGCUCCAAAUCUGACACGAGUGCUCCACAAACAGCAGCGCCA------GAGCAUUCGAAGGUCAAGAACGCCACAGAAAUCAG
................(((((........((((((.(((((((((.................------)))))))))...))).)))......)))))..... ( -21.17)
>DroEre_CAF1 3570 88 + 1
CCUCUAAAGCUUACAAUUCUGGCUCCAAAUCUGACACGAGUGCUCCUAAAACAGCAGCGCCAGAGCCAGAGCAUUCGAAAGUCAAGAA---------------
..(((...((((.((((((((((((....((......))(((((.((.....)).)))))..))))))))..))).).))))..))).--------------- ( -21.40)
>consensus
CAUUUAAAGCUUACAAUUCUGGCUCCAAAUCUGACACGAGUGCUCCACAAACAGCAGCGCCA______GAGCAUUCGAAAGUCAAGAACGCCACA_AAAUC_G
.............................((((((.(((((((((........((...))........)))))))))...))).)))................ (-15.32 = -15.66 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:55 2006