Locus 8757

Sequence ID 3L_DroMel_CAF1
Location 22,936,991 – 22,937,082
Length 91
Max. P 0.658470
window14333

overview

Window 3

Location 22,936,991 – 22,937,082
Length 91
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 71.27
Mean single sequence MFE -20.34
Consensus MFE -11.61
Energy contribution -11.30
Covariance contribution -0.31
Combinations/Pair 1.22
Mean z-score -1.60
Structure conservation index 0.57
SVM decision value 0.26
SVM RNA-class probability 0.658470
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22936991 91 + 23771897
UAUUUUUCCACGCGAUAUGCAAUCGUUUAGGAAC-------------------CUUAAAAAAG-GCAAAAGAAGAAAUCUUGAUGCGAUUGUUAAAACGGAAAAAACG-------GAU
..(((((((.........((((((((((((((.(-------------------(((....)))-)(....)......)))))).))))))))......)))))))...-------... ( -18.86)
>DroSec_CAF1 134483 92 + 1
UAUUUUUCCACGCGAUAUGCAAUCGUUUAAGGAG-------------------CUCAAAAAAGAGCGAAAAAAGAAAUCUUGCCGCGAUUUUUUAAUCGGAAAAAACG-------AAU
..(((((((..(((((.....))))).....(((-------------------(((......)))).....((((((((.......))))))))..)))))))))...-------... ( -20.60)
>DroSim_CAF1 124599 92 + 1
UAUUUUUCCACGCGAUAUGCAAUCGUUUAGGGAC-------------------CUCAAAAAAGAGCGAAAAAAGAAAUCUUGACGCGAUUUUUUAAUCGGAAAAAACG-------GAU
..(((((((..(((((.....)))))........-------------------...((((((..(((....(((....)))..)))..))))))....)))))))...-------... ( -18.40)
>DroEre_CAF1 137521 117 + 1
UCUUUUUCUUCGCGAAAUGCAAUCGCUUUGAGGUCCCUUCAAAAUUUUAUAUCGUUAAAAAAGUGCAAAAGAAGAAAACUUGAUGUGAUGGUUAGAUA-AAAGAAGCGGUACAUCGAU
...((((((((((((.......))))(((((((...)))))))...........................)))))))).(((((((.((.(((.....-.....))).))))))))). ( -23.50)
>consensus
UAUUUUUCCACGCGAUAUGCAAUCGUUUAGGGAC___________________CUCAAAAAAGAGCAAAAAAAGAAAUCUUGACGCGAUUGUUAAAUCGGAAAAAACG_______GAU
..(((((((..(((((.....)))))......................................(((....(((....)))..)))............)))))))............. (-11.61 = -11.30 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:50 2006