Locus 8755

Sequence ID 3L_DroMel_CAF1
Location 22,912,574 – 22,912,669
Length 95
Max. P 0.514533
window14331

overview

Window 1

Location 22,912,574 – 22,912,669
Length 95
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 80.36
Mean single sequence MFE -19.87
Consensus MFE -15.52
Energy contribution -15.97
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -1.31
Structure conservation index 0.78
SVM decision value -0.04
SVM RNA-class probability 0.514533
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22912574 95 + 23771897
U----UGCUGAAAAUGCAAUCUUGGCAAUUGGGAUUUAUUGAGACAUUAAAUGGAUCCCUCUAUUGACAAAAGAGUUGAUAGUGGUCUGUAUUGUCAAA
(----(((.......))))..((((((((.((((((((((.........)))))))))).((((..((......))..))))........)))))))). ( -26.80)
>DroSec_CAF1 116333 82 + 1
UUGCCUGCUGAAAAUGCAAUCUGGGCAAUUGGGAUUUAUUGAGACAUUAAAUGGAUCCCUCUACUGACAAAAGACUGGAUAG-----------------
((((((((.......)).....))))))..((((((((((.........))))))))))((((((......))..))))...----------------- ( -18.50)
>DroSim_CAF1 105326 82 + 1
UUUCCUGCUGAAAAUGCAAUCUGGGCAAUUGGGAUUUAUUGAGACAUUAAAUUGGUCCCUCUAUUGACAAAAGACUUGAUAG-----------------
.....(((.......))).(((..(((((.((((((..((((....))))...))))))...)))).)...)))........----------------- ( -14.30)
>consensus
UU_CCUGCUGAAAAUGCAAUCUGGGCAAUUGGGAUUUAUUGAGACAUUAAAUGGAUCCCUCUAUUGACAAAAGACUUGAUAG_________________
.....(((.......))).(((..(((((.((((((((((.........))))))))))...)))).)...)))......................... (-15.52 = -15.97 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:47 2006