Locus 8754

Sequence ID 3L_DroMel_CAF1
Location 22,903,170 – 22,903,274
Length 104
Max. P 0.778269
window14330

overview

Window 0

Location 22,903,170 – 22,903,274
Length 104
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 85.10
Mean single sequence MFE -25.58
Consensus MFE -18.91
Energy contribution -19.35
Covariance contribution 0.44
Combinations/Pair 1.16
Mean z-score -1.83
Structure conservation index 0.74
SVM decision value 0.55
SVM RNA-class probability 0.778269
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22903170 104 + 23771897
ACGACUAGUAUUGAGAACUGCGCAAAGAACAGUACGGAAACGGGACUAAGCGAAACUCUCAGCAA---------AUGUGUGGGUUGUAAAAUGCCAAAUUUUUACUAGUCACA
..((((((((((((((....(((.......(((.((....))..)))..)))....))))))...---------.......(((........))).......))))))))... ( -27.50)
>DroSec_CAF1 90734 104 + 1
ACAACUAGUAUUGGGAACUGCGAAAAUAACGGUAAGGAAACUGGACUAAGCGUAACUCUCAGCAA---------AUGUCUGGGUUGUAAAACGCCAAAUUUUUACUAGUCACA
...(((((((((((((..((((.......((((......)))).......))))..))))))...---------.....((((((....))).)))......))))))).... ( -23.54)
>DroSim_CAF1 95159 104 + 1
ACGACUAGUAUUGAGAACUGCGAAAAUAACGGUAAGGAAACGGGACUAAGCGUAACUCUCAGCAA---------AUGUGUGGGUUGUAAAACGCCAAAUUUGUACUAGUCACA
..(((((((..(((((..((((........(((..(....)...)))...))))..)))))((((---------((...((((((....))).))).)))))))))))))... ( -31.50)
>DroEre_CAF1 102153 113 + 1
ACGACUUACAUUGGGAACUGCGAAAAGAACAGUAAGGAAACAGGACUUAGCGAAACUCUCAGCAAAUACCAAAAAUGUAUGGGCCGUAAAACGCCAAAUUUACGCUAGUCACG
..((((((((((.((...(((.....(...(((..(....)...)))...)((.....)).)))....))...))))))..(((.(((((........))))))))))))... ( -19.80)
>consensus
ACGACUAGUAUUGAGAACUGCGAAAAGAACAGUAAGGAAACGGGACUAAGCGAAACUCUCAGCAA_________AUGUGUGGGUUGUAAAACGCCAAAUUUUUACUAGUCACA
..((((((((((((((..((((........(((..(....)...)))...))))..))))))...................(((........))).......))))))))... (-18.91 = -19.35 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:47 2006