| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,643,716 – 2,643,824 |
| Length | 108 |
| Max. P | 0.560799 |
| Location | 2,643,716 – 2,643,824 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.45 |
| Mean single sequence MFE | -40.83 |
| Consensus MFE | -24.91 |
| Energy contribution | -25.63 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2643716 108 + 23771897 CUCCUACAGCCUCUCGGCGGUU--GCAUCUUUGCAGGUAGGAUUCCUCGGAGAGUUCCACGCAAUCAAGUGGCGACCAAUAACGGUAGCCAUUUGUAGCCAAUCUC----AGGG .((((((.(((....)))..((--(((....)))))))))))..(((..((((.......((...((((((((.(((......))).))))))))..))...))))----))). ( -39.60) >DroSec_CAF1 4903 108 + 1 CUCCUACAGUCUCUCGGCGGUU--GCAUCUUUGCAGGUCGGAUUCCUCGGGGAGUUCCACGCAAUCAAGUGGCGACCAAUAACGGUAGCCAUUUGUAGCCAAUCUC----AGGG ..(((...(((....)))((((--((....((((..((.(((((((....))))))).))))))..(((((((.(((......))).)))))))))))))......----))). ( -37.80) >DroSim_CAF1 2821 108 + 1 CUCCUACAGUCUCUCGGCGGUU--GCAUCUUUGCAGGUAGGAUUCCUCGGGGAGUUCCACGCAAUCAAGUGGCGACCAAUCACGGUAGCCAUUUGUAGCCAAUCUC----AGGG ..(((...(((....)))((((--((....((((..((.(((((((....))))))).))))))..(((((((.(((......))).)))))))))))))......----))). ( -37.80) >DroEre_CAF1 5045 108 + 1 CUCCUACAGCCUCUCGGCGGUU--GCAUCCUUGCAGGUGGGAUUCCUGGCGGAGUUCCACGCCGUCAAGUGGCGACCAAUUACUGUGGCCAUUUGCAGCCAAUCGC----AGGG ......(((((.......))))--)...((((((..((((((((((....))))))))))((.(.((((((((.((........)).))))))))).)).....))----)))) ( -45.40) >DroYak_CAF1 2999 108 + 1 CUCCUACAGUCUAUCGGCGGUU--GCAUCCUUGCAGGUGGGAUUCCUGGCGGAGUUCCACGCGGUCAAGUGGCGACCCAUAACUGUGGCCAUUUGUAGCCAAUCGC----AGGG ........(((....)))....--....((((((..((((((((((....))))))))))..(((((((((((.((........)).))))))))..)))....))----)))) ( -43.00) >DroAna_CAF1 5080 108 + 1 CUCCGACAGCCUCUC--CGGUUCGGCAUCGCUCGCCGUCGGCUUCCUCAUCGAGUUCUAUGCCCCGCCGUGGCGGGCCAAAGCCU----CAAUGUUGGUUAGCUUCGGCGUGGG ..((((..(((....--.)))))))...(.(.(((((..((((.((.(((.(((..((.((.(((((....))))).)).)).))----).)))..))..)))).))))).).) ( -41.40) >consensus CUCCUACAGCCUCUCGGCGGUU__GCAUCUUUGCAGGUAGGAUUCCUCGGGGAGUUCCACGCAAUCAAGUGGCGACCAAUAACGGUAGCCAUUUGUAGCCAAUCUC____AGGG .((((((.(((....)))......(((....)))..))))))..(((....(((......((...((((((((.((........)).))))))))..))....)))....))). (-24.91 = -25.63 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:21 2006