Locus 8748

Sequence ID 3L_DroMel_CAF1
Location 22,857,760 – 22,857,853
Length 93
Max. P 0.973935
window14323

overview

Window 3

Location 22,857,760 – 22,857,853
Length 93
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 71.69
Mean single sequence MFE -18.11
Consensus MFE -10.47
Energy contribution -9.70
Covariance contribution -0.77
Combinations/Pair 1.33
Mean z-score -1.99
Structure conservation index 0.58
SVM decision value 1.72
SVM RNA-class probability 0.973935
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22857760 93 + 23771897
AUUGCAGUCUCGUUUUAAUUGUUAUUAAAGCGAUUAUUACGGCGGUGUA-CUGCCUCUUUCUUGCUUUUAUGCUCCGGCUCCCAAUUUUCCUUC---------
((((.((((((((((((((....)))))))))).......(((((....-)))))........((......))...))))..))))........--------- ( -20.60)
>DroPse_CAF1 44797 101 + 1
AUUACAGUUCCGUUUUAAUUGUAAUUAAAGCGAUUAUUACGACGGGGUUUUUGUCUCUUUUGUGCCCU--UGCCCUUGCCCUCUAUCUCCAUUCCAUUCCGUC
..........(((((((((....)))))))))........((((((((...............)))).--.((....))....................)))) ( -14.56)
>DroSec_CAF1 46098 93 + 1
AUUGCAGUUUCGUUUUAAUUGUAAUUAAAGCGAUUAUUACGGCGGUGUA-CUACCUCUUUCUUGCUUUUAUGCCCCGGCUCCCAAUUUUCCUUC---------
...((....((((((((((....))))))))))......(((.((((((-..(.(........).)..)))))))))))...............--------- ( -18.60)
>DroSim_CAF1 47458 93 + 1
AUUGCAGUUUCGUUUUAAUUGUAAUUAAAGCGAUUAUUACGGCGGUGUG-CUGCCUCUUUCUUGCUUUUAUGCUCCGGCUCCCAAUUUUCCUUC---------
...((((..((((((((((....)))))))))).......(((((....-)))))......))))......((....))...............--------- ( -20.00)
>DroEre_CAF1 50923 73 + 1
AUUGCACUUCCGUUUUAAUUGUAAUUAAAGCGAUUAUUACAGCGGUGUA-CUGCCGUUU--UUGCUUUUUUGCGU-----------------U----------
...(((....(((((((((....)))))))))........((((((...-..)))))).--.........)))..-----------------.---------- ( -15.80)
>DroYak_CAF1 47656 75 + 1
AGUGCAGUUCCUUUUUAAUUGUUAUUAAAGCGAUUAUUAUAGGAGUGUA-CUGCCGUUU-UUUGCUUUCUUGCGU-----------------UC---------
((((((.(((((...((((((((.....))))))))....)))))))))-)).......-...((......))..-----------------..--------- ( -19.10)
>consensus
AUUGCAGUUCCGUUUUAAUUGUAAUUAAAGCGAUUAUUACGGCGGUGUA_CUGCCUCUUUCUUGCUUUUAUGCCCCGGCUCCCAAUUUUCCUUC_________
...((((..(((((.(((((((.......)))))))....))))).....)))).........((......)).............................. (-10.47 =  -9.70 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:40 2006