Locus 8747

Sequence ID 3L_DroMel_CAF1
Location 22,854,503 – 22,854,598
Length 95
Max. P 0.685145
window14322

overview

Window 2

Location 22,854,503 – 22,854,598
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 83.96
Mean single sequence MFE -16.28
Consensus MFE -11.98
Energy contribution -12.40
Covariance contribution 0.42
Combinations/Pair 1.13
Mean z-score -2.20
Structure conservation index 0.74
SVM decision value 0.32
SVM RNA-class probability 0.685145
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22854503 95 - 23771897
AGCUGCCCAAUUUUUUUCUGUUAGCUAUUAAUCAAAGCAAAUAGCU-GCAGGAGAAAACUAAUAUUUAAUUACCACUCACCCACCACGGCAAAAAC
...((((...(((((((((((.(((((((..........)))))))-))))))))))).((((.....))))...............))))..... ( -20.50)
>DroSec_CAF1 42652 91 - 1
AGCUGCCCAAUUCUUUUCUGUUAGCUAUUAAUCAAAGCAAAUAGCU-GCAGGAGAAAACUAAUAUUUAAUUACCACUCA----CCACGGCAAAAAC
...((((......((((((((.(((((((..........)))))))-))))))))....((((.....)))).......----....))))..... ( -17.90)
>DroSim_CAF1 43871 91 - 1
AGCCGCUCAAUUCUUUUCUGUUAGCUAUUAAUCAAAGCAAAUAGCU-GCAGGAGAAAACUAAUAUUUAAUUACCACUCA----CCACGGCAAAAAC
.((((........((((((((.(((((((..........)))))))-))))))))....((((.....)))).......----...))))...... ( -19.50)
>DroEre_CAF1 47684 91 - 1
AGCUGCCCCAUUCUUUUCUGUUAGCCAUUAAUCAAAGCAAAUAGCU-GCAGGAGAAAACUAAUAUUUAAUUACCACUCA----CUACCGCAAAAAC
...(((.......((((((((.(((.(((..........))).)))-))))))))....((((.....)))).......----.....)))..... ( -10.10)
>DroWil_CAF1 64723 82 - 1
-----GCUUUUUCGUUUCGGUUAGCUAUUAAUCAAAGCAAAUAGCUUGCUGGCAAAGAUAAAUAUUUAAUUGCCACUCG---------ACAAGAAG
-----.((((((.(((..(((.(((((((..........))))))).)))(((((((((....))))..)))))....)---------)))))))) ( -16.90)
>DroYak_CAF1 44550 91 - 1
AGCUACCCUAUUCUUUUCUGUAAGAUACUAAUCAAAGCAAAUAGCU-GCAGGAGAAAAGUAAUAUUUAACUACCACUCA----CUACGGCAAAAAC
.(((.........((((((((..(((....)))..(((.....)))-))))))))..(((........)))........----....)))...... ( -12.80)
>consensus
AGCUGCCCAAUUCUUUUCUGUUAGCUAUUAAUCAAAGCAAAUAGCU_GCAGGAGAAAACUAAUAUUUAAUUACCACUCA____CCACGGCAAAAAC
.............((((((((.(((((((..........))))))).))))))))......................................... (-11.98 = -12.40 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:39 2006