Locus 8743

Sequence ID 3L_DroMel_CAF1
Location 22,837,137 – 22,837,257
Length 120
Max. P 0.539359
window14316

overview

Window 6

Location 22,837,137 – 22,837,257
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.56
Mean single sequence MFE -37.45
Consensus MFE -33.76
Energy contribution -34.07
Covariance contribution 0.31
Combinations/Pair 1.15
Mean z-score -1.31
Structure conservation index 0.90
SVM decision value 0.01
SVM RNA-class probability 0.539359
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22837137 120 - 23771897
UAUUCGUUUGGCCACCUCAACUAAGCGGUGGUCCACUUUUUGGUGCAGCUGAAGAAAGUCUACGAGACGCGGCAAUUGACGGUGAUUGUUAUCGUCAAGGAGCACCAGAGAAUACAGUGG
(((((...((((((((.(......).))))).)))...((((((((.((((......(((.....))).))))..((((((((((...))))))))))...)))))))))))))...... ( -44.60)
>DroSec_CAF1 25716 120 - 1
UAUUCGUUUGGCCACCUCAACCAAGUGGUAUUCCACUUUUUGAUGCAGCUGAAGAAAGUCUACGAGACGCGGCAGUUGACGGUGAUUGUUAUCAUCAAGGAGCACCAGAGAGUGCAGUGG
...........((((....(((....)))....(((((((((.((((((((..(...(((.....))).)..)))))...((((((....)))))).....))).)))))))))..)))) ( -35.30)
>DroSim_CAF1 25183 120 - 1
UAUUCGUUUGGCCACCUCAACUAAAUGAUAGUCCACUUCUUGGUGCAGCUGAAGAAAGUCUACGAGACGCGGCAGUUGACGGUGAUUGUUACCAUCAAGGAGCACCAGAGAAUGCAGUGG
...((((((((.........))))))))....((((((((((((((.((((......(((.....))).))))..((((.(((((...))))).))))...)))))).)))....))))) ( -35.70)
>DroEre_CAF1 31733 120 - 1
AAUCCGUUUGGCCAACUCCACUAAGCGGCAGUCCACUUUUUUGUGCAGCUGAAGAAAGUCUACGAGACGCGGCAAUUGACGGUGAUUGUUAUCGUCAAGGAGCACCAGAGAAUUAAUUGG
...((((((((.........))))))))((((....(((((.((((.((((......(((.....))).))))..((((((((((...))))))))))...)))).)))))....)))). ( -34.20)
>consensus
UAUUCGUUUGGCCACCUCAACUAAGCGGUAGUCCACUUUUUGGUGCAGCUGAAGAAAGUCUACGAGACGCGGCAAUUGACGGUGAUUGUUAUCAUCAAGGAGCACCAGAGAAUGCAGUGG
...((((((((.........))))))))....((((((((((((((.((((......(((.....))).))))..((((((((((...))))))))))...)))))))))).....)))) (-33.76 = -34.07 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:33 2006