Locus 8736

Sequence ID 3L_DroMel_CAF1
Location 22,806,043 – 22,806,142
Length 99
Max. P 0.619132
window14307

overview

Window 7

Location 22,806,043 – 22,806,142
Length 99
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 82.39
Mean single sequence MFE -19.94
Consensus MFE -11.60
Energy contribution -13.00
Covariance contribution 1.40
Combinations/Pair 1.09
Mean z-score -2.00
Structure conservation index 0.58
SVM decision value 0.17
SVM RNA-class probability 0.619132
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22806043 99 + 23771897
AUCGAUUCAUCAUUGUCGCACAAUGCUCACUCGAUAAAGUUCACUAUCCAGGUGAUUUGAACUAAGUUAAA---------UGUUAAUAUGUUUUACCCAAAAACACCA
(((((.....(((((.....))))).....)))))..((((((..(((.....))).))))))........---------........((((((.....))))))... ( -16.10)
>DroSec_CAF1 68091 101 + 1
AUCGAU-------UGUGCGAUAAUGAUGAAUCGAUAAAGUUCACUAUCCAGGUGAUUUGAACUAAGUUAAAGAACGAUCAUAUUCACAUGUUUUACCCAAAAACACCA
...(((-------(((.((((........))))....((((((..(((.....))).))))))..........)))))).........((((((.....))))))... ( -16.70)
>DroSim_CAF1 70957 108 + 1
AUCGAUUCAUCAUUGUCGCACAAUGAUGAAUCGAUAAAAAUCACUAUCCAGGUGAUUUGAACUAAGUUAAAGAACGAUCAUAUUCACAUGUUUUACCCAAAAACACCA
(((((((((((((((.....)))))))))))))))..((((((((.....)))))))).................((......))...((((((.....))))))... ( -30.40)
>DroEre_CAF1 71181 107 + 1
AUCGAUUCAUCAUUGCCGCACUAUGAAGAAUCGAAACAGUUUACUAUCCAGGUGAUUUGAACUAAGUUAAUGUACGAUC-UAUUUAUAUGUUUUACCCUAAAACACCA
.(((((((.((((.........)))).)))))))................((((.((((...((((...(((((.....-....)))))..))))...)))).)))). ( -18.40)
>DroYak_CAF1 70919 106 + 1
AUCGAUUCAUCAUUGUCGCACUAUGCAGAAUCGA--UAGAUUACUAUCCAGGUGAUUUGAACUAAUUUAAUGUACGAUCAUAUUUUGAUGUUUUACCCUAAAACACCA
.(((((((..(((.(.....).)))..)))))))--(((((((((.....))))))))).................((((.....))))((((((...)))))).... ( -18.10)
>consensus
AUCGAUUCAUCAUUGUCGCACAAUGAUGAAUCGAUAAAGUUCACUAUCCAGGUGAUUUGAACUAAGUUAAAGAACGAUCAUAUUCACAUGUUUUACCCAAAAACACCA
.(((((((..(((((.....)))))..)))))))......(((((.....))))).................................((((((.....))))))... (-11.60 = -13.00 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:25 2006