Locus 873

Sequence ID 3L_DroMel_CAF1
Location 2,637,673 – 2,637,773
Length 100
Max. P 0.534345
window1345

overview

Window 5

Location 2,637,673 – 2,637,773
Length 100
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 82.24
Mean single sequence MFE -27.15
Consensus MFE -17.76
Energy contribution -18.10
Covariance contribution 0.34
Combinations/Pair 1.31
Mean z-score -1.62
Structure conservation index 0.65
SVM decision value 0.00
SVM RNA-class probability 0.534345
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2637673 100 + 23771897
GCUUGGCGCUCAAACGCUCAGCUAAACAGGAUCUCAACCCAAUU---AGUAAAGUGUUUGCUGGUAACGCGGGUUUUAUGCCAAACAAACCCAUGCCCUGCAC
((..((((((((((((((..(((((...((........))..))---)))..))))))))..))).....((((((..........))))))..)))..)).. ( -29.20)
>DroPse_CAF1 2074 103 + 1
GUCUGGCCCUCAAGCGUGUGGCUAAACAACAAGAGAAUGCCAUCGGCAACAAAGUGUUCGCCAACAAUUUGGGCUUUGCCGCCACCAAGCCUAUGCCCUGCAC
((..(((......((..(((((...............((((...)))).((((.((((....)))).))))(((...))))))))...))....)))..)).. ( -25.40)
>DroSec_CAF1 1999 100 + 1
GCUUGGCGCUCAAACGCUCAGCUAAACAGGAUCUCAACCCAAUU---AGUAAAGUUUUUGCUGGAAAUGCGGGUUUUGUCCCAAACAAACCCAUGCCCUGCAC
(((.((((......)))).)))....((((............((---(((((.....)))))))......((((((.((.....))))))))....))))... ( -24.80)
>DroSim_CAF1 2006 100 + 1
GCUUGGCGCUCAAACGCUCAGCUAAACAGGAUCUCAACCCAAUU---AGUAAAGUUUUUGCUGGUAAUGCGGGUUUUGUCCCAAACAAACCCAUGCCCUGCAC
(((.((((......)))).)))....((((...........(((---(((((.....)))))))).....((((((.((.....))))))))....))))... ( -26.10)
>DroEre_CAF1 2008 100 + 1
GUUUGGCUCUUAAACGCUCAGCUAAACAGGAUCCUAACCCAAUU---AGUAAAGUGUUUGCUGGAAACGCGGGUUUUGUGCCAAACAAACCCAUGCCCUGCAC
((..(((....(((((((..(((((...((........))..))---)))..)))))))((.(....)))((((((.((.....))))))))..)))..)).. ( -29.40)
>DroYak_CAF1 2010 100 + 1
GUUUGGCUCUCAAACGCUCAGCUAAACAGGAUCUCAAUCCAAUU---AGUAAAGUGUUUACUGGAACCGUGAGCUUUGUGCCAAACAAACCCAUGCCCUGCAC
(((((((...((((.(((((........((((....))))..((---(((((.....))))))).....))))))))).))))))).......(((...))). ( -28.00)
>consensus
GCUUGGCGCUCAAACGCUCAGCUAAACAGGAUCUCAACCCAAUU___AGUAAAGUGUUUGCUGGAAACGCGGGUUUUGUCCCAAACAAACCCAUGCCCUGCAC
((..(((...((((((((..(((.....((........)).......)))..))))))))..........(((.(((((.....))))))))..)))..)).. (-17.76 = -18.10 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:19 2006