Locus 8726

Sequence ID 3L_DroMel_CAF1
Location 22,728,982 – 22,729,081
Length 99
Max. P 0.996693
window14291

overview

Window 1

Location 22,728,982 – 22,729,081
Length 99
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -17.63
Consensus MFE -15.89
Energy contribution -16.08
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -2.49
Structure conservation index 0.90
SVM decision value 2.73
SVM RNA-class probability 0.996693
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22728982 99 - 23771897
AGAACGUUUAUAUCAAAGAAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAUUAAAAA
.....((...(((((.((..((((((((((....-.))))))))))..............--------.....(((.....))).)).)))))...)).......... ( -17.20)
>DroPse_CAF1 12745 99 - 1
GGAAUGUUUAUAUCAAAGUAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAGUAAAAA
....(((...(((((.(((.((((((((((....-.))))))))))..............--------.....(((.....)))))).)))))...)))......... ( -19.60)
>DroEre_CAF1 6450 99 - 1
AGAACGUUUAUAUCAAAGAAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAUUAAAAA
.....((...(((((.((..((((((((((....-.))))))))))..............--------.....(((.....))).)).)))))...)).......... ( -17.20)
>DroWil_CAF1 11750 108 - 1
AGAAAGAAUAUAUCAAAUCAAAUUGUGGCAAAUUGAUGCUAUAAUUCCAAUAAAAGCAAAAAAAAAAAACUUAGACUGAAUGUCACUGUGAUAAAUGCAAAGUAAAAC
..........(((((.....((((((((((......))))))))))...........................(((.....)))....)))))............... ( -15.00)
>DroYak_CAF1 6454 99 - 1
AGAACGUUUAUAUCAAAGAAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAUUAAAAA
.....((...(((((.((..((((((((((....-.))))))))))..............--------.....(((.....))).)).)))))...)).......... ( -17.20)
>DroPer_CAF1 12956 99 - 1
GGAAUGUUUAUAUCAAAGUAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAGUAAAAA
....(((...(((((.(((.((((((((((....-.))))))))))..............--------.....(((.....)))))).)))))...)))......... ( -19.60)
>consensus
AGAACGUUUAUAUCAAAGAAAAUUAUGGCAAAUU_AUGCUAUAAUUCCAAUAAAAGCAAA________AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAGUAAAAA
.....((...(((((.((..((((((((((......))))))))))...........................(((.....))).)).)))))...)).......... (-15.89 = -16.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:09 2006