Locus 8712

Sequence ID 3L_DroMel_CAF1
Location 22,635,320 – 22,635,430
Length 110
Max. P 0.523136
window14273

overview

Window 3

Location 22,635,320 – 22,635,430
Length 110
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 88.96
Mean single sequence MFE -38.38
Consensus MFE -25.29
Energy contribution -26.17
Covariance contribution 0.88
Combinations/Pair 1.16
Mean z-score -2.31
Structure conservation index 0.66
SVM decision value -0.02
SVM RNA-class probability 0.523136
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22635320 110 - 23771897
-----CGGGGCUUGGUGAAUUUAAAUAUUCCUACGAAUCGAUUGGCCC---CCAACCAAGCAGGGCCGAAUAGAUCCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUAGCUGUAUUA
-----.(.(((((((.((((......)))))))((.(((..(((((((---...........)))))))...))).))((.((((((.(((.....))))))))).)))))).).... ( -35.20)
>DroSec_CAF1 3891 110 - 1
-----CGGGUCUCGGUGAAUUUAAAUGUUUCUCCGAAUCGAUUGGCCC---CCAACCAAGCAGGGCCGAACAGAUCCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUAGCUGUAUUA
-----((((((((((.(((.........))).))))...(.(((((((---...........))))))).).))))))((.((((((.(((.....))))))))).)).......... ( -41.40)
>DroSim_CAF1 2240 110 - 1
-----CGGGUCUCGGUGAAUUUAAAUGUUCCUCCGAAUCGAUUGGCCC---CCAACCAAGCAGGGCCGAACAGAUCCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUAGCUGUAUUA
-----((((((((((.((((......))))..))))...(.(((((((---...........))))))).).))))))((.((((((.(((.....))))))))).)).......... ( -42.00)
>DroEre_CAF1 571 118 - 1
GGGCUCGGGGUUCGGUGAAUUUAAAUGUUCCUCCAUAUCGAUUCGCCACAACCAACCAACCAGGCCCGAACAGAUUCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUGGCUGUAUUA
((((..((((((.((((((((.(.(((......))).).))))))))..))))......))..))))..((((...(.((.((((((.(((.....))))))))).)).))))).... ( -41.90)
>DroYak_CAF1 13302 108 - 1
-----CGGGAUUCGGUGAAUUUAAAUGUUCCUCCAAAUCGAUUCGCC-----CAACCACCCAGGGCCGAACAGAUCCGACCUGAGCCAUUCCACCAGGAGGCUGAAGUGGCUGUAUUA
-----((((..((((.((((......))))......(((..((((((-----(.........))).))))..)))))))))))(((((((.((((....)).)).)))))))...... ( -31.40)
>consensus
_____CGGGGCUCGGUGAAUUUAAAUGUUCCUCCGAAUCGAUUGGCCC___CCAACCAAGCAGGGCCGAACAGAUCCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUAGCUGUAUUA
.....(((...((((.((((......))))..)))).))).((((((................))))))((((.....((.((((((.(((.....))))))))).))..)))).... (-25.29 = -26.17 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:52 2006