Locus 8710

Sequence ID 3L_DroMel_CAF1
Location 22,624,415 – 22,624,508
Length 93
Max. P 0.910228
window14271

overview

Window 1

Location 22,624,415 – 22,624,508
Length 93
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 75.54
Mean single sequence MFE -17.83
Consensus MFE -1.72
Energy contribution -1.72
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.10
SVM decision value 1.07
SVM RNA-class probability 0.910228
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22624415 93 - 23771897
UCUGUUCCUGUAGCAACAACUUAAUGCGCAACAACAAGCUGCGAUGUUGUGACCAAUUGAAAACUCCACCAAACGGCAACG-------AAGCUAAAAAAA
..........((((......(((((.(((((((.(.......).)))))))....))))).............((....))-------..))))...... ( -16.50)
>DroPse_CAF1 4024 84 - 1
UGUAUCCUUGUAGCUACAACUUAAUGCGCAACAACGAAUGGC-AUGCAAUGACCAAAAGAAAAC-CAACAAAAAAAUAACA-------------GAAAA-
(((.((.((((.((.............)).)))).)).((((-((...))).))).........-..)))...........-------------.....- (  -7.12)
>DroSec_CAF1 4071 99 - 1
UCUGUUCCUGUUGCAACAACUUAAUGCGCAACAACAAGCUGCGAUGUGGUGACCAAGUGAAAACUCCACCAAACGGCAACAGAGAGCAAAGCCAAAAAA-
..((((((((((((............((((.(.....).))))...(((((....(((....))).)))))....))))))).)))))...........- ( -29.20)
>DroSim_CAF1 4127 99 - 1
UCUGUUCCUGUUGCAACAACUUAAUGCGCAACAACAAGCUGCGAUGUGGUGACCAAGUGAAAACUCCACCAAACGGCAACAGAGAGCAAAGCCAAAAAA-
..((((((((((((............((((.(.....).))))...(((((....(((....))).)))))....))))))).)))))...........- ( -29.20)
>DroPer_CAF1 3037 84 - 1
UGUAUCCUUGUAGCUACAACUUAAUGCGCAACAACGAAUGGC-AUGCAAUGACCAAAAGAAAAC-CAACAAAAAAAUAACA-------------GAAAA-
(((.((.((((.((.............)).)))).)).((((-((...))).))).........-..)))...........-------------.....- (  -7.12)
>consensus
UCUGUUCCUGUAGCAACAACUUAAUGCGCAACAACAAGCUGCGAUGUAGUGACCAAAUGAAAACUCCACCAAACGGCAACA_______AAGC_AAAAAA_
........(((.((.............)).)))................................................................... ( -1.72 =  -1.72 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:50 2006