| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,621,105 – 2,621,195 |
| Length | 90 |
| Max. P | 0.543275 |
| Location | 2,621,105 – 2,621,195 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 65.72 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -10.12 |
| Energy contribution | -9.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2621105 90 + 23771897 CCAGAGGACGAAGACGAUGCCCAAAAGAUCGGUAGCACAGCGGAAAACAGCUGCGAGGCCGAAGAUCCCCUGGGAGCAGUCACAGUUC------------CU ..((.((((...(((....((((...(((((((..(.((((........)))).)..)))))...))...))))....)))...))))------------)) ( -29.70) >DroVir_CAF1 10817 93 + 1 ---GAAGCUGAGG------AUGAAAAGAUUGGCAGCACAGCUGAAAACAGUUGCGAUGCCGAAGAUCCGCUUGGCGCAGCCACAGAGCCCGCCGCGGAACAA ---..........------.........((((((.(.((((((....)))))).).)))))).(.(((((..((((..((......)).))))))))).).. ( -31.70) >DroGri_CAF1 11015 99 + 1 ---GAUACUGAAGAGGAUCAUGAGAAAAUUGGCAGUACAGCGGAAAACAGUUGUGAUGCUGAAGAUCCACUGGGUGCAGCGACACAGCCAGUUGCGGAACAG ---....(((....(((((.(....)..(..(((.((((((........)))))).)))..).)))))(((((.((........)).)))))..)))..... ( -27.70) >DroSec_CAF1 19198 90 + 1 CCAGAGAACGAAGACGAUGCCCAAAAGAUCGGUAGCACAGCGGAAAACAGCUGCGAGGCCGAAGAUCCCCUGGGAGCAGUCACAGUUC------------CU ..((.((((...(((....((((...(((((((..(.((((........)))).)..)))))...))...))))....)))...))))------------)) ( -30.20) >DroWil_CAF1 7914 90 + 1 AUUGAAGAAGAAGAUGAGCUAGAUAAAAUAGGCAGCACAGCUGAGAACAGUUGUGAGGCAGAAGAUCCACUUGGAGCAGCGACAACUG------------GG ..................((((.........((..((((((((....))))))))..)).(....(((....)))....).....)))------------). ( -21.70) >DroMoj_CAF1 11416 93 + 1 ---GAUGCCGAGG------AUGAAAAAAUAGGCAGUACUGCAGAAAACAGUUGCGAUGCCGAAGAUCCUCUAGGUGCAGCUACACAGCCGCCUGCCGAUAAG ---......((((------((.........((((..((((.......)))).....))))....))))))((((((..(((....)))))))))........ ( -22.82) >consensus ___GAAGACGAAGA_GAU_AUGAAAAAAUAGGCAGCACAGCGGAAAACAGUUGCGAGGCCGAAGAUCCACUGGGAGCAGCCACAGAGC____________AG ............................(((((..(.((((........)))).)..)))))....((....))............................ (-10.12 = -9.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:17 2006