Locus 8709

Sequence ID 3L_DroMel_CAF1
Location 22,618,819 – 22,618,925
Length 106
Max. P 0.999953
window14270

overview

Window 0

Location 22,618,819 – 22,618,925
Length 106
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 71.83
Mean single sequence MFE -22.67
Consensus MFE -14.93
Energy contribution -14.50
Covariance contribution -0.43
Combinations/Pair 1.29
Mean z-score -2.61
Structure conservation index 0.66
SVM decision value 4.82
SVM RNA-class probability 0.999953
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22618819 106 - 23771897
GGCAAGCACCGUUUGCCGUCGAAAUCUUCCAUUUCCCACUUUCCAUUCCAUUUCCACCUCUUAC---CCCACUUCCCACCUGGCGACCUUCCGCCAACGGAUGACUGCA
(((((((...)))))))((((((((.....))))).............................---......(((....(((((......)))))..))).))).... ( -22.50)
>DroSec_CAF1 5972 104 - 1
----AGCUCCCUUCGCCGUCGGAAUCUUCCAUUUCCCACUUUCCACCU-CUGACCACCUCUCACCGCCCCACUUCCCACCUGGCGACCUUCCGCCAGCGGAUGGCUGCA
----..........((((((((((........))))............-.............................(((((((......)))))).))))))).... ( -24.40)
>DroYak_CAF1 7072 88 - 1
GGCGAGUUCCUUUCGCCGUCGAAAUCUUUCAUAUUCCACUUUCCAG---------------------CCCACUUCCCAUUUGGUGUCCUUCCGUCAACGGAUGACUGCA
((((((.....))))))((((.......................((---------------------..((((........))))..))((((....)))))))).... ( -21.10)
>consensus
GGC_AGCUCCCUUCGCCGUCGAAAUCUUCCAUUUCCCACUUUCCAC____U__CCACCUCU_AC___CCCACUUCCCACCUGGCGACCUUCCGCCAACGGAUGACUGCA
..............((.((((((....)))...........................................(((...((((((......)))))).))).))).)). (-14.93 = -14.50 +  -0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:49 2006