Locus 8693

Sequence ID	3L_DroMel_CAF1
Location	22,540,119 – 22,540,211
Length	92
Max. P	0.759725

overview

Window 9

Location	22,540,119 – 22,540,211
Length	92
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	81.91
Mean single sequence MFE	-38.22
Consensus MFE	-32.89
Energy contribution	-32.70
Covariance contribution	-0.19
Combinations/Pair	1.11
Mean z-score	-1.60
Structure conservation index	0.86
SVM decision value	0.50
SVM RNA-class probability	0.759725
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22540119 92 + 23771897
-----------------------UCCCACUCGGAGAUUGACACAGCAACUGUUGCGUCAAGUCGUGUGGAAACAGCGGAAGGGAUUGCCGUGCCUGAGCACUCCACAAAGCAGUU
-----------------------..((((.(((...(((((.((((....)))).))))).))).)))).....((.....(((.(((((....)).))).))).....)).... ( -30.80)
>DroSec_CAF1 2555 115 + 1
UCAUCCGCCGCGGGGUGGUCCCGUCCCACUCGGAGAUUGACGCGGCAACUGUUGCGUCAAAUCGUGUGGAAACAGCGGAAGGGAUUGCCGUGCCUGAGCACUCCACUAAGCACUU
......((.(.((((..(((((.(((........((((((((((((....)))))))).))))((.((....))))))).)))))..))((((....)))).)).)...)).... ( -47.00)
>DroSim_CAF1 2 93 + 1
----------------------GUCCCACUCGGAGAUUGACGCGGCAACUGUUGCGUCAAGUCGUGUGGAAACAGCGGAAGGGAUUGCCGUGCCUGAGCACUCCACUAAGCACUU
----------------------...((((.(((...((((((((((....)))))))))).))).))))....((.(((.((.....))((((....))))))).))........ ( -35.40)
>DroYak_CAF1 1942 109 + 1
UCAUCCGCUGUGGCGUG-----GUCCCACUCGAAGAUUGACGC-GCAAUUGUUGCGUCAAGUCGUGUGGAAACAACGGAAGGGAUUGCCGUGCCUGAGCACUCCACUAAGUAGUU
......(((((((.(..-----(((((((.(((...(((((((-((....).)))))))).))).))(....).......)))))..).((((....)))).))))..))).... ( -39.70)
>consensus
______________________GUCCCACUCGGAGAUUGACGCGGCAACUGUUGCGUCAAGUCGUGUGGAAACAGCGGAAGGGAUUGCCGUGCCUGAGCACUCCACUAAGCACUU
.........................((((.(((...((((((((((....)))))))))).))).)))).....((.....(((.(((((....)).))).))).....)).... (-32.89 = -32.70 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:29 2006