Locus 869

Sequence ID 3L_DroMel_CAF1
Location 2,612,030 – 2,612,122
Length 92
Max. P 0.734722
window1338

overview

Window 8

Location 2,612,030 – 2,612,122
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -29.14
Consensus MFE -21.58
Energy contribution -21.18
Covariance contribution -0.40
Combinations/Pair 1.09
Mean z-score -2.21
Structure conservation index 0.74
SVM decision value 0.43
SVM RNA-class probability 0.734722
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2612030 92 + 23771897
ACAUGCCACGGCCUACAUAAAUAUGCAUAUGCUCCGCAAACAUUUGCCAAGUUAUUUGCGUUGGAUGCGGAAAAGGGUUGUUUGUGGUGCCC
....((((((((((..........((....))((((((..((..(((.((....)).))).))..))))))...))))....)))))).... ( -25.30)
>DroSec_CAF1 10203 88 + 1
ACAUGCCACGGCCUACAUAAAUAUGCAUAUGCUCCGCAAACAUUUGCCAAGUUAUUUGCGUGGGAUGCGGAAAAGGGUU----GUGGUGCCC
....((((((((((..........((....))((((((..(...(((.((....)).)))..)..))))))...)))))----))))).... ( -29.80)
>DroSim_CAF1 12890 88 + 1
ACAUGCCACGGCCUACAUAAAUAUGCAUAUGCUCCGCAAACAUUUGCCAAGUUAUUUGCGUGGGAUGCGGAAAAGGGUU----GUGGUGCCC
....((((((((((..........((....))((((((..(...(((.((....)).)))..)..))))))...)))))----))))).... ( -29.80)
>DroEre_CAF1 10392 86 + 1
ACACGCCACGGCCUACAUAAAUAUGCAUAUGCUUCGCAAACAUUUGCCAAGUUGUAUGCGUUGGAUGCGGAA--UGGUU----GUGGUGCCC
...((((((((((..(((....((((((((((((.((((....)))).))).)))))))))...))).....--.))))----))))))... ( -30.90)
>DroYak_CAF1 13701 86 + 1
ACACGCCACGGCCUACAUAAAUAUGCAUAUGCUCCGCAAACAUUUGCCAAGUUGUAUGCGUUGGAUGCGGAA--UGGUU----GUGGUGCCC
...((((((((((...........((....))((((((..((..(((..........))).))..)))))).--.))))----))))))... ( -29.90)
>consensus
ACAUGCCACGGCCUACAUAAAUAUGCAUAUGCUCCGCAAACAUUUGCCAAGUUAUUUGCGUUGGAUGCGGAAAAGGGUU____GUGGUGCCC
...((((((((((...........((....))((((((..(...(((..........)))..)..))))))....))))....))))))... (-21.58 = -21.18 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:12 2006