Locus 8684

Sequence ID 3L_DroMel_CAF1
Location 22,522,731 – 22,522,828
Length 97
Max. P 0.727584
window14232

overview

Window 2

Location 22,522,731 – 22,522,828
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 84.95
Mean single sequence MFE -23.48
Consensus MFE -16.58
Energy contribution -19.02
Covariance contribution 2.44
Combinations/Pair 1.04
Mean z-score -1.92
Structure conservation index 0.71
SVM decision value 0.42
SVM RNA-class probability 0.727584
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22522731 97 - 23771897
AUACUCCUAGUUGGUGUUUCGCCAAUAGCCUCCUGACCCCCAUUAGGAACCCGGUUGGCUUCGGCCAAUUAUCAUCAGCUAGUUCCAUCAGUUGCCA
......((((((((((..............((((((......))))))....(((((((....)))))))..))))))))))............... ( -29.20)
>DroSec_CAF1 6244 97 - 1
AUACUCCUAGUUGGUGUUCCGCCAAUAGCCUCCUGACCCCCAUUAGGAACCCGGUUGGCUUCGGCCAAUUAUCGUCAGCUAGUUCCAUCAGUUGCCA
......(((((((..(..............((((((......))))))....(((((((....)))))))..)..)))))))............... ( -26.60)
>DroSim_CAF1 7105 97 - 1
AUACUCCUAGUUGGUGUUCCGCCAAUAGCCUCCUGACCCCCAUUAGGAAACCGGUUGGCUUCGGCCAAUUAUCGUCAGCUAGUUCCAUCAGUUGCCA
......(((((((..(..............((((((......))))))....(((((((....)))))))..)..)))))))............... ( -26.60)
>DroEre_CAF1 5276 84 - 1
AUACUCCCAGCU-------------AUACCUCCUGACCCCCAUUAGCAACCCGCUUGGCUACCGCCAAUUAUCAUCAUCAAGGUCCAUCAGCUGCCA
.......(((((-------------......(((((.........((.....))(((((....))))).........)).)))......)))))... ( -15.90)
>DroYak_CAF1 6655 97 - 1
AUACUCCUGGUUGGUGUUCCGCCAAAAACUUCAUGACCCCCAUUAGCAACCCGGUUGGCUGCCGCCAAUUAUCAUCAUCAAGGUCCAUCAGUUGCCA
........((((((((...)))))..((((....((((..............(((((((....)))))))...........))))....))))))). ( -19.11)
>consensus
AUACUCCUAGUUGGUGUUCCGCCAAUAGCCUCCUGACCCCCAUUAGGAACCCGGUUGGCUUCGGCCAAUUAUCAUCAGCUAGUUCCAUCAGUUGCCA
......((((((((((..............((((((......))))))....(((((((....)))))))..))))))))))............... (-16.58 = -19.02 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:14 2006