Locus 8683

Sequence ID 3L_DroMel_CAF1
Location 22,522,303 – 22,522,407
Length 104
Max. P 0.766603
window14231

overview

Window 1

Location 22,522,303 – 22,522,407
Length 104
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.08
Mean single sequence MFE -21.15
Consensus MFE -14.71
Energy contribution -15.24
Covariance contribution 0.53
Combinations/Pair 1.17
Mean z-score -1.59
Structure conservation index 0.70
SVM decision value 0.52
SVM RNA-class probability 0.766603
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22522303 104 - 23771897
AACUUCCAU-UUUAUUCCUAUUCCGAUUCCG-AAUAGCAUUCCCAUUCCCAUUGCC--AUCUCUCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA
.........-.......((((((.......)-)))))..((..(((((((......--..........)))))))..))...((((..((((.....))))..)))). ( -17.39)
>DroSec_CAF1 5820 104 - 1
AACUUCCAU-UCCAUUCCUAUUCCGAUACCG-AAUAGCAUUCCCAUUCACACUGCC--AUCUCUCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA
.........-.......((((((.......)-))))).........(((((((.((--..........)).)))).)))...((((..((((.....))))..)))). ( -18.60)
>DroSim_CAF1 6674 103 - 1
AACUUCCAU-UCCAUUCC-AUUCCGAUUCCG-AAUAGCAUUCCCAUUCCCACUGCC--AUCUCUCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA
.........-........-............-..((((((((((............--..........))))))))))....((((..((((.....))))..)))). ( -17.25)
>DroEre_CAF1 4873 89 - 1
CAAUUCCAU-UCCAUUCCGAUUCCGAUCCCG-AAUAGCACUCCCAA-----------------UCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACGGAGA
.........-..........(((((.....(-((((((((((((..-----------------.....)))))))))....))))...((((.....)))).))))). ( -25.50)
>DroYak_CAF1 6239 98 - 1
CAAUCUCAU-UCCAUUCCCAUUCCG-------AACAGCAUUCCCAUUCCCACUGCC--AUCUCUCCAUGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA
...(((((.-...............-------..((((((((((((..........--........))))))))))))..........((((.....))))..))))) ( -23.67)
>DroPer_CAF1 26647 102 - 1
CAAUCCCCUGUGCAGUCCCCUGC------CCACACACUCAUGCCAUUCGCAUUGCCACAUCUCUCAACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGCGA
(((((((((((((((....))))------..........((((.....))))..............))))))).))))..........((((.....))))....... ( -24.50)
>consensus
AAAUUCCAU_UCCAUUCCCAUUCCGAU_CCG_AAUAGCAUUCCCAUUCCCACUGCC__AUCUCUCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA
..................................((((((((((........................))))))))))....((((..((((.....))))..)))). (-14.71 = -15.24 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:13 2006