Locus 8670

Sequence ID 3L_DroMel_CAF1
Location 22,502,460 – 22,502,561
Length 101
Max. P 0.536146
window14210

overview

Window 0

Location 22,502,460 – 22,502,561
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 96.53
Mean single sequence MFE -11.85
Consensus MFE -10.45
Energy contribution -10.45
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.88
SVM decision value 0.01
SVM RNA-class probability 0.536146
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22502460 101 + 23771897
CCCACACAGAUACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUUUUUAUUUAUUUCUCCUCUUUUUGUUUCUUAACAUUUUUAU
.......(((.(((.....(((((....)))))..(((((..(........)..))))).......................))).)))............ ( -11.10)
>DroSec_CAF1 10852 101 + 1
CCCACACAGAAACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUUUUUAUUUAUUUCUCCUCUUCUUGUUUCUUAACAUUUUUAU
.......(((((((.....(((((....)))))..(((((..(........)..))))).......................)))))))............ ( -14.40)
>DroSim_CAF1 10911 101 + 1
UCCACACAGAUACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUUUUUAUUUAUUUCUCCUCUUUUGGUUUCUUAACAUUUUUAU
.(((...(((.........(((((....)))))..(((((..(........)..))))).................)))..)))................. ( -10.80)
>DroEre_CAF1 12814 100 + 1
CCCACACAGAUACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUC-UUAUUUAUUUUUCCUCUUUUUGUUUCUUAACAUUUUUAU
.......(((.(((.....(((((....)))))..(((((..(........)..)))))..-....................))).)))............ ( -11.10)
>consensus
CCCACACAGAUACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUUUUUAUUUAUUUCUCCUCUUUUUGUUUCUUAACAUUUUUAU
.......(((.((......(((((....)))))..(((((..(........)..)))))........................)).)))............ (-10.45 = -10.45 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:54 2006