| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,486,533 – 22,486,629 |
| Length | 96 |
| Max. P | 0.861802 |
| Location | 22,486,533 – 22,486,629 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 92.88 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -20.81 |
| Energy contribution | -21.50 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22486533 96 - 23771897 CCCCGACUUACUAAGUGUGGCUCUGUCAUUUAUAAUAAAGUGUCAAAUCAAAAGAACGUGAGCCACACAUCCCAACGAGCUAUUCGUCAAAGAAGU .....((((.((..(((((((((((.(((((......))))).))..((....))....)))))))))......(((((...)))))...)))))) ( -23.50) >DroSec_CAF1 2308 96 - 1 CCCCGACUUACUAAGUGUGGCUCUGUCAUUUAUAAUAAAGUGUCAAAUCAAAAGAACGUGAGCCGCACAUCCCGACGAGCUAUUCGUCAGAGAAGU .....((((.((..(((((((((((.(((((......))))).))..((....))....))))))))).....((((((...))))))..)))))) ( -27.70) >DroSim_CAF1 2336 96 - 1 CCCCGACUUAAUAAGUGUGGCUCUGUCAUUUAUAAUAAAGUGUCAAAUCAAAAGAACGUGAGCCGCACAUCCCGACGAGCUAUUCGUCAGAGAAGU .....((((.....(((((((((((.(((((......))))).))..((....))....))))))))).....((((((...))))))....)))) ( -27.00) >DroEre_CAF1 4112 94 - 1 -CCCGACUUUCUAAGUGCGGCUCUGUCAUUUAUAAUAAAGUGUCAAAUCAAAGGAACGUG-GCCACACAUCCCAGCGAGCAAUUCGUCAGCGAAAU -..(((((.....))).))((((((.(((((......))))).)).......(((..(((-....))).)))....))))..((((....)))).. ( -19.10) >consensus CCCCGACUUACUAAGUGUGGCUCUGUCAUUUAUAAUAAAGUGUCAAAUCAAAAGAACGUGAGCCACACAUCCCAACGAGCUAUUCGUCAGAGAAGU ..............(((((((((((.(((((......))))).))..((....))....))))))))).....((((((...))))))........ (-20.81 = -21.50 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:48 2006