| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,463,513 – 22,463,608 |
| Length | 95 |
| Max. P | 0.868831 |
| Location | 22,463,513 – 22,463,608 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 78.40 |
| Mean single sequence MFE | -30.97 |
| Consensus MFE | -21.33 |
| Energy contribution | -20.55 |
| Covariance contribution | -0.78 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22463513 95 + 23771897 GGUCCUUCCUUGAACUUCUUUAGCAGCGCUUGAGCCACUUGACGAUGCAGUCGAAGAGAUGCUGACUGCAUUUUUAAGCAGGAGCUUUCGAGGCA .......((((((((((((......((......))..(((((.((((((((((.........)))))))))).))))).)))))..))))))).. ( -28.80) >DroPse_CAF1 30607 83 + 1 ------------CGGUCCUUGAGCUGUUCUUGAGCCACUUGGCAAUGCAGUCGAACGAGCGCCGACUGCAUUUUAAAGCAGCAACUUCGGAGGCA ------------..(((..(((((((((.(((((((....)))((((((((((.........))))))))))))))))))))....)))..))). ( -30.30) >DroSec_CAF1 15324 95 + 1 GGCCCUUCUUUGGACUUCUUCAGCUGCGCUUGAGCCACUUGACGAUGCAGUCGAAGAGAUGCUGACUGCAUUUUUAAGCACGAGCUUUCGAGGCA .((((....(((((....)))))....(((((.((...((((.((((((((((.........)))))))))).)))))).)))))....).))). ( -27.80) >DroEre_CAF1 19406 94 + 1 GGCCCAUCCUUGGACUUCUUGAGCAGCGCUUGAGCCACUUGACGAUGCAGUCGACGAGA-GCUGACUGCAUUUUUAAGCAGGAGUUUUCGAGGCA .(((..((...((((((((..(((...)))..)....(((((.((((((((((.(....-).)))))))))).)))))..)))))))..))))). ( -34.10) >DroYak_CAF1 20988 94 + 1 GGCCCAUCCUUGGACUUCUUGAACAGCGCUUGAGCCACUUGACGAUGCAGUCGACGAGA-GCUGACUGCAUUUUUAAGCAGGAGCUUUCGAGGCA .(((((....)))....((((((.(((.((((.....(((((.((((((((((.(....-).)))))))))).))))))))).))))))))))). ( -35.80) >DroPer_CAF1 30837 83 + 1 ------------CAGUCCUUGAGCGGUUCUUGAGCCACUUGGCAAUGCAGUCGAACGAGCGCCGACUGCAUUUUAAAGCAGCAACUUCGGAGGCA ------------..(((((.(((..((((((..(((....)))((((((((((.........))))))))))...))).)))..))).)).))). ( -29.00) >consensus GGCCC_UCCUUGGACUUCUUGAGCAGCGCUUGAGCCACUUGACGAUGCAGUCGAAGAGA_GCUGACUGCAUUUUUAAGCAGGAGCUUUCGAGGCA .................................(((.(((((.((((((((((.........)))))))))).)))))...(......)..))). (-21.33 = -20.55 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:32 2006