Locus 8652

Sequence ID 3L_DroMel_CAF1
Location 22,452,662 – 22,452,765
Length 103
Max. P 0.638580
window14180

overview

Window 0

Location 22,452,662 – 22,452,765
Length 103
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 90.26
Mean single sequence MFE -43.96
Consensus MFE -35.08
Energy contribution -36.28
Covariance contribution 1.20
Combinations/Pair 1.06
Mean z-score -1.49
Structure conservation index 0.80
SVM decision value 0.22
SVM RNA-class probability 0.638580
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22452662 103 + 23771897
GCUGCGGAAGUUGGGCGGGCUGCUAUCGGAAAUGCCGCGUUAUGCGCCACCAUGCAUUUGUGUUUUCGAUGGU-CUGCAGUUGGACCGGCGGUGUAGGCAGUCC-
(((((....))..)))((((((((..(((.....))).....((((((.((((((....)))).......(((-((......))))))).))))))))))))))- ( -39.70)
>DroSec_CAF1 4018 105 + 1
GCUGCGGAAGUUGGGCGGGCUGCUAUCGGAUAUGCCGCGUUAUGCGCCGCCAUGCACUUGUGUUUUCGAUGGUCCUGCAGCCGGACCGGCGGUGUAGGCAGUCCU
(((((....))..)))((((((((..(((.....))).....(((((((((..(((....))).......(((((.......)))))))))))))))))))))). ( -48.30)
>DroSim_CAF1 4022 105 + 1
GCUGCGGAAGUUGGGCGGGCUGCUAUCGGAUAUGCCGCGUUAUGCGCCGCCAUGCACUUGUGUUUUCGAUGGUCCUGCAGCCGGACCGGCGGUGUAGGCAGUCCU
(((((....))..)))((((((((..(((.....))).....(((((((((..(((....))).......(((((.......)))))))))))))))))))))). ( -48.30)
>DroEre_CAF1 8314 102 + 1
GCUGCAGAAGUUGGGCGGGUGGCUAUCGGAAAUGCCGUGUUAUGCGCCGCCUUGCAUUUGUGUUUUU--UGGUCCUGCAGUCGGACCGCCGAUGUAGGCAGUCC-
(((((((......((((.(((((...(((.....))).))))).))))(((..(((....)))....--.))).))))))).((((.(((......))).))))- ( -41.60)
>DroYak_CAF1 9525 104 + 1
UCUGCGGAAGCUAGGCGGGUGGCUAUCGGAAAUUCCGUGUUAUGCGCCGCCUUGCAUUUGUGUUUUCGAUGGUCCUGCAGCCGGACCGCCGGUGUAGGCAGUCC-
...(((((.((.(((((((((((...(((.....))).)))))...)))))).)).)))))......(((.(.((((((.((((....))))))))))).))).- ( -41.90)
>consensus
GCUGCGGAAGUUGGGCGGGCUGCUAUCGGAAAUGCCGCGUUAUGCGCCGCCAUGCAUUUGUGUUUUCGAUGGUCCUGCAGCCGGACCGGCGGUGUAGGCAGUCC_
(((((....))..)))((((((((..(((.....))).....(((((((((..(((....))).......(((((.......)))))))))))))))))))))). (-35.08 = -36.28 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:26 2006