Locus 8649

Sequence ID 3L_DroMel_CAF1
Location 22,451,589 – 22,451,679
Length 90
Max. P 0.737942
window14174

overview

Window 4

Location 22,451,589 – 22,451,679
Length 90
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 93.22
Mean single sequence MFE -12.97
Consensus MFE -12.07
Energy contribution -12.31
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.19
Structure conservation index 0.93
SVM decision value 0.44
SVM RNA-class probability 0.737942
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22451589 90 + 23771897
A-AGAGCGGGCAAACAAGGUAAAUGGCUCGUAGUUAAAAUGCCGUUAAUAAAUCAUAAAACAAAACAGUUUCAGCAAUA-UAAACGAAAAGA
.-...((((((..............))))))...........((((.(((.......((((......))))......))-).))))...... (  -9.96)
>DroSec_CAF1 2929 91 + 1
A-AGCGCGGGCAAACAAGGUAAAUGGCUCGUAGUUGAAAUGCCGUUAAUAAAUCAUAAAACAAAACAGUUUCAGCAAUAAUAAAAGAAAAGA
.-...((((((..............)))))).((((((((...(((.................))).))))))))................. ( -13.87)
>DroSim_CAF1 2932 92 + 1
AAAGCGCGGGCAAACAAGGUAAAUGGCUCGUAGUUGAAAUGCCGUUAAUAAAUCAUAAAACAAAGCAGUUUCACCAAUAAUAAAAUAAAAGA
...((....))......(((.(((((((((....)))...))))))...........((((......)))).)))................. ( -11.10)
>DroEre_CAF1 7242 91 + 1
G-AGCGCGGGCAAACAAAGUAAAAGGCUCGUAGUUGAAAUGCCGUUAAUAAAUCAUAAAAUAAAACAGUUUCAGCAAUAAUAAACGAAAAGA
.-...((((((..............)))))).((((((((...(((.................))).))))))))................. ( -13.87)
>DroYak_CAF1 8437 90 + 1
A-AGCGCGGGCAAACAAAGUAAAUGGCUCGUAGUUGAAAUGCCGUUUAUAAAUCA-AAAAUAAAACAGUUUCAGCAAUAAUAAACGAAAAGA
.-...((((((..............)))))).((((((((....(((((......-...)))))...))))))))................. ( -16.04)
>consensus
A_AGCGCGGGCAAACAAGGUAAAUGGCUCGUAGUUGAAAUGCCGUUAAUAAAUCAUAAAACAAAACAGUUUCAGCAAUAAUAAACGAAAAGA
.....((((((..............)))))).((((((((...(((.................))).))))))))................. (-12.07 = -12.31 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:20 2006