Locus 8641

Sequence ID 3L_DroMel_CAF1
Location 22,440,458 – 22,440,560
Length 102
Max. P 0.711762
window14160

overview

Window 0

Location 22,440,458 – 22,440,560
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 84.88
Mean single sequence MFE -14.38
Consensus MFE -9.53
Energy contribution -9.98
Covariance contribution 0.45
Combinations/Pair 1.06
Mean z-score -2.35
Structure conservation index 0.66
SVM decision value 0.38
SVM RNA-class probability 0.711762
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22440458 102 - 23771897
UCACUAAUGGAAUUGUUUCCCGCUCCACUUAUCCUCGUCAACUUCAGGGUUUCUACUGCAGGUCGUCAUAUUUCCGUAUUUCGAUUCAUUACUAAUUCUCUU
......((((((.((...((.((.......(((((.(......).))))).......)).))....))...))))))......................... ( -14.44)
>DroSec_CAF1 12179 87 - 1
UCACUAAUCGAAUUAUUUCCUGCUCCACUUAUCCUCGUCA---------------UCGCAGGACGUCAUAUUUCUGUAUUUCGAUUCAUUACUAAUUCUCUU
.........((((((..((((((...((........))..---------------..))))))((..((((....))))..)).........)))))).... ( -13.70)
>DroSim_CAF1 16706 87 - 1
UCACUAAUGGAAUUAUUUCCUGCUCCACUUAUCCUCGUCA---------------UUGCAGGACGUCAUAUUUCUGUAUUUCGAUUCAUUACUAAUUCUCUU
....(((((((......((((((...((........))..---------------..))))))((..((((....))))..)).)))))))........... ( -15.00)
>consensus
UCACUAAUGGAAUUAUUUCCUGCUCCACUUAUCCUCGUCA_______________UUGCAGGACGUCAUAUUUCUGUAUUUCGAUUCAUUACUAAUUCUCUU
.........((((((..((((((..................................))))))((..((((....))))..)).........)))))).... ( -9.53 =  -9.98 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:08 2006