| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,435,036 – 22,435,146 |
| Length | 110 |
| Max. P | 0.663889 |
| Location | 22,435,036 – 22,435,146 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.59 |
| Mean single sequence MFE | -34.17 |
| Consensus MFE | -23.21 |
| Energy contribution | -23.16 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22435036 110 + 23771897 UCACACGCAAAUGCGCACCUAC-------CUAC---CGUGCCCUUUUUAUAUCCUGUUUUGGGAAUGCUUUGUUGUGUGCAUUAUCAGCCAUGUGUGAAAAUCAGGACAUGCGCGUGAGA ...(((((.(((((((((..((-------..(.---(((.(((.................))).))).)..)).)))))))))....((.((((.(........).)))))))))))... ( -30.93) >DroPse_CAF1 5126 106 + 1 UCGCACGCAAAUGCGCACUUUG-------CUUUGUGUGUGUCCUUUCUGGGUCCCGCC-------CGAGCUGUAGUGUGCAUUAUCAGCCAUGCGUGAAAAUCAGGACAUGAGCGUGAGA ((.(((((.((((((((((..(-------(((.(.(((.(.(((....))).).))))-------.))))...))))))))))......(((((.((.....)).).)))).))))).)) ( -41.90) >DroSim_CAF1 11898 110 + 1 UCACACGCAAAUGCGCACUUAC-------CUGC---CCUGCCCUUUCUAUAUCCUGUUUUGGGAAUGCUUUGUUGUGUGCAUUAUCAGCCAUGUGUGAAAAUCAGGACAUGCGCGUGAGA ...(((((.(((((((((....-------..((---....(((...(........)....)))...))......)))))))))....((.((((.(........).)))))))))))... ( -32.10) >DroPer_CAF1 5244 106 + 1 UCGCACGCAAAUGCGCACUUUG-------CUUUGUGUGUGUCCUUUCUGGGUCCCGCC-------CGAGCUGUAGUGUGCAUUAUCAGCCAUGCGUGAAAAUCAGGACAUGAGCGUGAGA ((.(((((.((((((((((..(-------(((.(.(((.(.(((....))).).))))-------.))))...))))))))))......(((((.((.....)).).)))).))))).)) ( -41.90) >DroEre_CAF1 12845 116 + 1 UCGCACGCAAAUGCGCACUUACCUUUUGCCUGC---CCUACCCUUUUUAUAUCCUGUUUUG-GAUUGCUUUGUUGUGUGCAUUAUCAGCCAUGUGUGAAAAUCAGGACAUGCGCGUGGGA ((.(((((.(((((((((..((.....((....---..............((((......)-))).))...)).)))))))))....((.((((.(........).))))))))))).)) ( -30.11) >DroYak_CAF1 49220 109 + 1 UCGCACGCAAAUGCGCACUUAC-------CUGC---CCUACCCGUUUUAUAUCCUGUUUUG-GAAUGCUUUGUUGUGAGCAUUAUCAGCCAUGUGUGAAAAUCAGGACAUGCGCGUGGGA ((.(((((..(((.(((.....-------.)))---(((.....((((((((...(((...-.(((((((......)))))))...)))...))))))))...))).)))..))))).)) ( -28.10) >consensus UCGCACGCAAAUGCGCACUUAC_______CUGC___CCUGCCCUUUCUAUAUCCUGUUUUG_GAAUGCUUUGUUGUGUGCAUUAUCAGCCAUGUGUGAAAAUCAGGACAUGCGCGUGAGA ((.(((((.(((((((((........................................................)))))))))......(((((.((.....)).).)))).))))).)) (-23.21 = -23.16 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:02 2006