Locus 8623

Sequence ID 3L_DroMel_CAF1
Location 22,429,273 – 22,429,393
Length 120
Max. P 0.806425
window14129

overview

Window 9

Location 22,429,273 – 22,429,393
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.25
Mean single sequence MFE -39.84
Consensus MFE -35.38
Energy contribution -36.66
Covariance contribution 1.28
Combinations/Pair 1.05
Mean z-score -1.36
Structure conservation index 0.89
SVM decision value 0.63
SVM RNA-class probability 0.806425
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22429273 120 - 23771897
AUUACAACAGUCCGACAUGCAAACACUGCAGCAUGGGUGGGGGCGGGCUGACUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA
....(((((((((((..((((.....))))((((..((((..(((((.((.(((((....))))).)).)))))...)))).)))).......)))))))).)))....((......)). ( -39.10)
>DroSec_CAF1 996 120 - 1
AUUACAACAGCCCGACAUGCAAACACUGCAGCAUGGGUGGAGGCGGGCUGACUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA
....(((((((((((..((((.....))))((((.((((...(((((.((.(((((....))))).)).))))).))))...)))).......)))))))).)))....((......)). ( -41.70)
>DroSim_CAF1 5894 119 - 1
AUUACAACAGCCCGACAUGCAAACACUGCAGCAUGGGUGG-GGCGGGCUGACUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA
....(((((((((((..((((.....))))((((.((((.-.(((((.((.(((((....))))).)).))))).))))...)))).......)))))))).)))....((......)). ( -41.80)
>DroEre_CAF1 7006 118 - 1
AUUACAACAGCCCGACAUGCAAACACUGCAGGG--GGGUGGGGCGGGCGUUCUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA
....(((((((((((.(((.......((((..(--..(((..(((((.((((((((....)))))).))))))).)))..)..))))..))).)))))))).)))....((......)). ( -39.20)
>DroYak_CAF1 41079 120 - 1
AUUACAACAGCCCGACAUGCAAACACUGCAGGAUGGGUGGGGGCCGGCUGACUGCUGCGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA
....(((((((((((..((((..(((.((((.((.(((.(....).))).).).)))))))(((((...))))).........))))......)))))))).)))....((......)). ( -37.40)
>consensus
AUUACAACAGCCCGACAUGCAAACACUGCAGCAUGGGUGGGGGCGGGCUGACUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA
....(((((((((((..((((.....))))((((.((((...(((((.((.(((((....))))).)).))))).))))...)))).......)))))))).)))....((......)). (-35.38 = -36.66 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:37 2006