Locus 8622

Sequence ID 3L_DroMel_CAF1
Location 22,428,884 – 22,428,989
Length 105
Max. P 0.727437
window14128

overview

Window 8

Location 22,428,884 – 22,428,989
Length 105
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 85.80
Mean single sequence MFE -18.48
Consensus MFE -15.07
Energy contribution -15.33
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.82
SVM decision value 0.42
SVM RNA-class probability 0.727437
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22428884 105 + 23771897
CUCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGAGCACGCGAUACGACCAGCCUUUCCAUCGCAACACCAUCCCAUCCC-----AUCCC
..........(((((((......))))))).((.......(((((....))))).....(((((..((........)).)))))....))..........-----..... ( -14.60)
>DroSec_CAF1 590 110 + 1
CUCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGGGCACGCGAUACGACCAGCCUUUCCAUCGCAACACCAUCCCAUCCCAGUACAUCCC
..........(((((((......))))))).((.....(((((((....)))))))...(((((..((........)).)))))....)).................... ( -18.20)
>DroSim_CAF1 5488 110 + 1
CUCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGGGCACGCGAUACGACCAGCCUUUCCAUCGCAACACCAUCCCAUCCCAGUCCAUCCC
..........(((((((......))))))).(((....(((((((....)))))))...(((((..((........)).))))).................)))...... ( -19.00)
>DroEre_CAF1 6647 94 + 1
CGCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGGGCACGCGAUGCGACCAGCCCAACCCUUGCCCGCUCAUCC----------------
.((.......(((((((......))))))).((((......((((....))))((((.(((...)))....))))......)))).))......---------------- ( -22.10)
>consensus
CUCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGGGCACGCGAUACGACCAGCCUUUCCAUCGCAACACCAUCCCAUCCC_____AUCCC
..........(((((((......))))))).(((....(((((((....)))))))..((.....))....))).................................... (-15.07 = -15.33 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:36 2006