Locus 862

Sequence ID 3L_DroMel_CAF1
Location 2,604,741 – 2,604,850
Length 109
Max. P 0.919641
window1326

overview

Window 6

Location 2,604,741 – 2,604,850
Length 109
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 88.19
Mean single sequence MFE -17.80
Consensus MFE -13.60
Energy contribution -13.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.76
SVM decision value 1.13
SVM RNA-class probability 0.919641
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2604741 109 - 23771897
AAUUUCACACGUUGCUGGGGCAAAAAAAAAUAAUACCAAAAUGGUGCACAGAGAAUAAGAA----------AAAAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC
..........((((((((................(((.....)))((((............----------.....))))....))))))))(((....)))................. ( -23.03)
>DroSec_CAF1 3092 106 - 1
AAUUUCACACGUUGCAGGCG-AAAAAAAAAUAAUACCAAAAUGGUGCACAGAAAAUAAGAA------------AAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC
.........((((((..((.-.............(((.....)))((((............------------...)))).......)).)))))).((((((.....))))))..... ( -18.66)
>DroSim_CAF1 5567 106 - 1
AAUUUCACACGUUGCAGGCG-AAAAAAAAAUAAUACCAAAAUGGUGCACAGAAAAUAAGAA------------AAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC
.........((((((..((.-.............(((.....)))((((............------------...)))).......)).)))))).((((((.....))))))..... ( -18.66)
>DroEre_CAF1 3162 103 - 1
AAUUUCACACGUUGCAAGG---AAA-AAAAUAAUACCAAAAUGGUGCAGAAAAAAUA------------AAAAAAAGUGCAUAUCCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC
.........((((((..((---(..-........(((.....)))(((.........------------........)))...)))....)))))).((((((.....))))))..... ( -14.93)
>DroYak_CAF1 6144 116 - 1
AAUUUCACACGUUGCAAGG---AAAAAAAAUAAUACCAAAAUGGUGCAGAAAAAAUACGAAAAAAAAAAAAAGAAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC
.........((((((....---...........((((.....))))...............................(((.......))))))))).((((((.....))))))..... ( -13.70)
>consensus
AAUUUCACACGUUGCAGGGG_AAAAAAAAAUAAUACCAAAAUGGUGCACAGAAAAUAAGAA__________A_AAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC
.........((((((..................((((.....))))...............................(((.......))))))))).((((((.....))))))..... (-13.60 = -13.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:01 2006