| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,397,331 – 22,397,448 |
| Length | 117 |
| Max. P | 0.672150 |
| Location | 22,397,331 – 22,397,448 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 86.90 |
| Mean single sequence MFE | -37.60 |
| Consensus MFE | -33.90 |
| Energy contribution | -33.24 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.672150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22397331 117 - 23771897 UUGGAAUCUUUAUCGGAUCGGAUGGGAUCGAAUUGAAUGGCAUCGGAUCGGGUUGGACUGGCAUGAGUUCCUCAUUGCAUACUGCGUCGCAGCUCGCCCGCCCAUUUGCGUCCGAUU ...........(((((((((((((((...((.((((......)))).))((((.((....(((((((...)))).)))...((((...)))))).)))).)))))))).))))))). ( -38.50) >DroSec_CAF1 48346 98 - 1 UUGGAAUCUUUAUCGGAUCGGAUGGGAU---------------CGGAUCGGGUUGGACUGGCAUGAGUUCCUCAUUGCAUACUGCGUCGCAGCUCG----CCCAUUUGCAUCCGAUU ...........(((((((((((((((..---------------.....((((((((((....(((((...))))).((.....))))).)))))))----)))))))).))))))). ( -34.91) >DroSim_CAF1 63427 102 - 1 UUGGAAUCUUUAUCGGAUCGGAUGGGAU---------------CGGAUCGGGUUGGACUGGCAUGAGUUCCUCAUUGCAUACUGCGUCGCAGCUCGCCCGCCCAUCUGCGUUCGAUU ...........(((((((((((((((..---------------(((..((((((((((....(((((...))))).((.....))))).))))))).))))))))))).))))))). ( -39.40) >consensus UUGGAAUCUUUAUCGGAUCGGAUGGGAU_______________CGGAUCGGGUUGGACUGGCAUGAGUUCCUCAUUGCAUACUGCGUCGCAGCUCGCCCGCCCAUUUGCGUCCGAUU ...........(((((((((((((((......................((((((((((....(((((...))))).((.....))))).)))))))....)))))))).))))))). (-33.90 = -33.24 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:14 2006