Locus 8590

Sequence ID 3L_DroMel_CAF1
Location 22,375,261 – 22,375,355
Length 94
Max. P 0.517932
window14072

overview

Window 2

Location 22,375,261 – 22,375,355
Length 94
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.99
Mean single sequence MFE -21.25
Consensus MFE -18.51
Energy contribution -18.07
Covariance contribution -0.44
Combinations/Pair 1.08
Mean z-score -1.38
Structure conservation index 0.87
SVM decision value -0.03
SVM RNA-class probability 0.517932
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22375261 94 - 23771897
CUGCGUCGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU-UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAACCAACUAU-------------------------
((((.(((((((..((.((......)).))..)))))))....-.............(((..((((......))))..)))))))..........------------------------- ( -19.90)
>DroPse_CAF1 78266 95 - 1
CUGCGACGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAUUUUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAACCGAAACCAACUAU-------------------------
......((((((..((.((......)).))..)))))).........((((.((((.(((..((((......))))..))).))))..))))...------------------------- ( -18.90)
>DroSim_CAF1 40828 94 - 1
CUGCGUCGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU-UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAACCAACUAU-------------------------
((((.(((((((..((.((......)).))..)))))))....-.............(((..((((......))))..)))))))..........------------------------- ( -19.90)
>DroEre_CAF1 42806 94 - 1
CUGCGUUGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU-UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAACCAACUAU-------------------------
((((..(((((......(((.....(((..((((.((((....-.)))).))))..)))....)))......)))))....))))..........------------------------- ( -19.90)
>DroYak_CAF1 36219 119 - 1
CUGCGUUGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU-UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAGCCAACUAUAGCUCAACAACGAAACAAGCAAACG
.(((.(((((((..((.((......)).))..)))))))...(-(((((((...((.(((..((((......))))..))).))((((........))))..))))))))...))).... ( -30.00)
>DroPer_CAF1 80981 95 - 1
CUGCGACGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAUUUUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAACCGAAACCAACUAU-------------------------
......((((((..((.((......)).))..)))))).........((((.((((.(((..((((......))))..))).))))..))))...------------------------- ( -18.90)
>consensus
CUGCGUCGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU_UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAACCAACUAU_________________________
......((((((..((.((......)).))..)))))).........((((.((((.(((..((((......))))..))).))))..))))............................ (-18.51 = -18.07 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:44 2006