Locus 8585

Sequence ID 3L_DroMel_CAF1
Location 22,368,832 – 22,368,952
Length 120
Max. P 0.913950
window14064

overview

Window 4

Location 22,368,832 – 22,368,952
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.77
Mean single sequence MFE -29.75
Consensus MFE -24.08
Energy contribution -24.38
Covariance contribution 0.31
Combinations/Pair 1.07
Mean z-score -2.91
Structure conservation index 0.81
SVM decision value 1.09
SVM RNA-class probability 0.913950
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22368832 120 - 23771897
AUGACUAUUCCCGAUUUUCCGGGAAAAGCAGGCAGCUCCGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC
.(((((.((((((......))))))..(((((.(((...(((..(.....)..)))...))))))))...........)))))...........((((((((...))))))))....... ( -39.70)
>DroPse_CAF1 70460 118 - 1
AUGACUAUUCCCGAUUUUCCUGGAAAAGCUGGCAGCAC--CACGCAUUAUGUAUGCCAUGCUUCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCCC
.((((.......(((((((.((.(.((((((((((((.--.........))).))))).)))).).))..)).)))))(((....)))))))..((((((((...))))))))....... ( -26.20)
>DroSim_CAF1 34329 120 - 1
AUGACUAUUCCCGAUUUUCCAGGAAAAGCUGGCAGCUCCGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC
.(((((.((((.(......).))))..((.((.(((...(((..(.....)..)))...))))).))...........)))))...........((((((((...))))))))....... ( -29.00)
>DroEre_CAF1 37050 120 - 1
AUGACUAUUCCCGAUUUUCCAGGAAAAGCAGGCAACUCCGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC
.((((((((..((((....(((((...(.((....)).)(((.((((.....))))..)))))))).))))...))).)))))...........((((((((...))))))))....... ( -28.30)
>DroYak_CAF1 28511 120 - 1
AUGACUAUUCCCGAUUUUCCAGGAAAAGCAGGCGACUCUGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC
.(((((.((((.(......).))))..(((((.(.(...(((..(.....)..)))...)).)))))...........)))))...........((((((((...))))))))....... ( -29.10)
>DroPer_CAF1 73294 118 - 1
AUGACUAUUCCCGAUUUUCCUGGAAAAGCUGGCAGCAC--CACGCAUUAUGUAUGCCAUGCUUCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCCC
.((((.......(((((((.((.(.((((((((((((.--.........))).))))).)))).).))..)).)))))(((....)))))))..((((((((...))))))))....... ( -26.20)
>consensus
AUGACUAUUCCCGAUUUUCCAGGAAAAGCAGGCAGCUCCGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC
.(((((.((((.(......).))))..((.((.(((...(((..(.....)..)))...))))).))...........)))))...........((((((((...))))))))....... (-24.08 = -24.38 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:36 2006