Locus 858

Sequence ID 3L_DroMel_CAF1
Location 2,602,670 – 2,602,789
Length 119
Max. P 0.667911
window1318

overview

Window 8

Location 2,602,670 – 2,602,789
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.72
Mean single sequence MFE -31.84
Consensus MFE -28.90
Energy contribution -28.90
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -1.19
Structure conservation index 0.91
SVM decision value 0.28
SVM RNA-class probability 0.667911
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2602670 119 + 23771897
CUUGAGAGCCGCAGUUUACGGCUUAGUGGAUUUCACCUGUACCGAA-AAGUCCAAAAGUUGAGCCAGUCAACCGGAUUGCGAAAAGUAAACUGCAAAGCAAUUAACAUUGUUUCCCCGAA
..........(((((((((((((((((((((((.............-)))))))....)))))))((((.....)))).......))))))))).(((((((....)))))))....... ( -30.82)
>DroSec_CAF1 1006 119 + 1
CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUUUCACCUGUACCGAA-AAGUCCAUCAGUUGAGUCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUCCCCGAA
..........((((((((((((((..(((((.......)).)))..-)))))......(((.(.(((((.....)))))).))).))))))))).(((((((....)))))))....... ( -30.40)
>DroSim_CAF1 3435 119 + 1
CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUUUCACCUGUACCGAA-AAGUCCAACAGUUGAGUCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUCCCCGAA
..........((((((((((((((..(((((.......)).)))..-)))))......(((.(.(((((.....)))))).))).))))))))).(((((((....)))))))....... ( -30.40)
>DroEre_CAF1 1034 119 + 1
CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUGUCGCCCGUACCGAC-AAGUCCAACAGUUGAGUCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUUCCCCAA
..........(((((((((((((((((((((((((.......))))-)..)))....))))))))((((.....)))).......)))))))))((((((((....))))))))...... ( -34.20)
>DroYak_CAF1 3997 120 + 1
CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUGUCACCUGUACCAAGAAAGUCCAACAGUUGAGCCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUUCCCCAA
..........(((((((((((((((((((((.....((......))...))))....))))))))((((.....)))).......)))))))))((((((((....))))))))...... ( -33.40)
>consensus
CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUUUCACCUGUACCGAA_AAGUCCAACAGUUGAGUCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUCCCCGAA
..........(((((((((((((((((((((((..............))))))....))))))))((((.....)))).......))))))))).(((((((....)))))))....... (-28.90 = -28.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:54 2006